Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq14557 104 2e-17 seq18908 93.3 3e-14 >seq14557 Length=1650391 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || ||||||||||||| || ||| | | || |||| || Sbjct 90850 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGC 90909 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| ||| | || |||| ||| || || || | ||| || ||||| || || Sbjct 90910 TTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 90969 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | ||||||| ||||||| || | |||||||||||| || | Sbjct 90970 GC--CTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAG 91027 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || |||||||| Sbjct 91028 TGAGGGTCTTGACGAAGATCTGCAT 91052 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | || || |||||||| || || ||||||||||||| | Sbjct 91282 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91341 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || ||||| ||| | || |||| ||| || || || Sbjct 91342 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91401 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | ||||||| ||||||| Sbjct 91402 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCGCTGGGCTCCA 91459 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||||| || || || || |||||||| |||||||| Sbjct 91460 CCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 91508 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| || | || || |||||||| || || ||||||||||||| | Sbjct 91054 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91113 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || || | || ||||| ||| | || |||| ||| || || || Sbjct 91114 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91173 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | |||| | ||||||| Sbjct 91174 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTCTCAATGTTGTCACTGGGCTCCA 91231 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || || || || ||||| || |||||||| Sbjct 91232 CCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91280 >seq18908 Length=594 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/206 (71%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGG-ACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTG 16791 ||||| |||| |||| || || ||||||||||||| || ||| | | || || | || Sbjct 578 TGCAGGGTGGCACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTG 519 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATT 16849 ||||| ||| | || |||| ||| || || || | ||| || ||||| || || Sbjct 518 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 459 Query 16850 TGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCG 16909 || |||||| | | | ||||||| ||||||| || | ||||||||||| || Sbjct 458 GGC--CTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCA 401 Query 16910 GTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || |||||||| |||||||| Sbjct 400 GTGAGGGTCTTGACAAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404960758441270