Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq14557 176 8e-39 seq18908 158 2e-33 seq14537 93.3 8e-14 >seq14557 Length=1650391 Score = 176 bits (194), Expect = 8e-39 Identities = 170/216 (79%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 |||| || | ||| || |||||||| || |||||||| || ||||| || || | ||| Sbjct 90838 CGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 90897 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | |||||| || || || || || || || || || || ||||||||||||||| Sbjct 90898 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTG 90957 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGAT 68425 || || ||||| ||||| ||| ||| |||||||| ||| | || || || | |||||| Sbjct 90958 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGGGTGAT 91016 Query 68426 GGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || ||||||||||||||||| |||||||| Sbjct 91017 GGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91052 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | ||| || ||||||||||| |||||||| || ||||| Sbjct 91054 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91113 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || || || || ||| Sbjct 91114 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91173 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||||| ||| ||| ||| |||| | || || Sbjct 91174 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGTTGTCACTGGGCTCCACC 91233 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||||||| || ||||||||||||||||| |||||||| Sbjct 91234 TCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91280 Score = 174 bits (192), Expect = 3e-38 Identities = 177/228 (78%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| || | ||| || ||||||||||| |||||||| || ||||| Sbjct 91282 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91341 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || || || || || || || || || || ||| Sbjct 91342 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91401 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 |||||||||||||| || ||||| ||||| ||| ||| |||||||| ||| | || || Sbjct 91402 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCAC 91460 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| || |||||||||||||| || |||||||| Sbjct 91461 CTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 91508 >seq18908 Length=594 Score = 158 bits (174), Expect = 2e-33 Identities = 161/206 (78%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 68258 GTGTAGCGTGG-ACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACT 68316 ||| || |||| ||||||| || ||||| || ||||| || || | |||||||| | || Sbjct 579 GTGCAGGGTGGCACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCT 520 Query 68317 GCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCT 68376 |||| || || || || || || || || || || ||||||||||||||||| || |||| Sbjct 519 GCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCT 460 Query 68377 TTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTTTCCC 68435 | ||||| ||| ||| |||||||| |||| || || || | ||||||||||| || Sbjct 459 TGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCA 401 Query 68436 GTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || |||||||| Sbjct 400 GTGAGGGTCTTGACAAAGATCTGCAT 375 >seq14537 Length=2063196 Score = 93.3 bits (102), Expect = 8e-14 Identities = 342/524 (65%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 31725 GTGTATTCGACAATCTCGGCACAAAGATTGCTGCCCGTGATGGTGCCGGCATTGGACTGC 31784 |||||||| || ||||| | || || ||||||| |||||||||| || ||| Sbjct 886337 GTGTATTCCACGATCTCCGTGCACAGGTTGCTGCTTTTGATGGTGCCCAGGTTCTGCTGG 886396 Query 31785 ATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCACGTAAGGCATGCCCGTCTCGATCTG 31843 || ||||| ||| || || ||| |||| ||||| ||| || |||| || || |||| Sbjct 886397 TTGCTCTTCCTGTTGCAGGC-GTCTTTGTAGAGCATGTACGGGGTGCCGGTTTCCGTCTG 886455 Query 31844 CGTGATGATCATCGCATTCCAGACATCGCGCGCTTTGACGACTTTCTTCGCACGCCCCTC 31903 | ||| || || | ||| || | | || || || || ||| | || ||||| Sbjct 886456 GGACTCGATGATGGCGTGCCACACCTGCTGGGCCTTCACCACGCGCTTGACGCGGCCCTC 886515 Query 31904 GGACTCGTAGCGAAGA-TACAGGTCCTCGTACTCCTTGCCAAAGGCATCGGTTAGACCGG 31962 ||||||| || | || || | ||| |||||| || || ||| | | |||| Sbjct 886516 CTTCTCGTAG-GAGGTGTAGAGCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAAGCCGG 886574 Query 31963 GACACTCCTTGGGGTCGAAGAGCGACCATGCGACATCGGCCTCTACTCGCTTCATGAACA 32022 | || || | || | || ||||| | | | ||| || | ||||||||||| Sbjct 886575 GGCATTCGTCCGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAACA 886634 Query 32023 GGTCGTTCAGCCACATCGCGTAAAACAGATTCCTGGCGCGTTGGGTCTCCTCACCCTGGT 32082 |||| | ||| | |||||| ||||| | |||||| | || ||||| ||| || Sbjct 886635 AGTCGGGGATCCAGAGCGCGTAGAACAGGTCCCTGGCTCTCTGCTCCTCCTTCCCCGTGT 886694 Query 32083 TACGTC-GGAGCAGCAGGAAGTCCATGATGTCGGGGTGGTGGGGCTCGAGGTACACGGCG 32141 | | || ||| ||||||||| | || |||| ||| |||||| ||||||| |||| Sbjct 886695 T-CTTCTTCAGCTCCAGGAAGTCAAAGACGTCGAAGTGCCAGGGCTCCAGGTACATGGCG 886753 Query 32142 AAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCGTA---TGCAGATGTCGTGTCGTAC 32195 || | || || | || ||||||| |||| ||| | ||| ||| ||| Sbjct 886754 AAGGCGCCGGGCCGCTTGTTCCCTCCCTGGTCCACGTAGCGTGCCG-TGT--TGTTGTAA 886810 Query 32196 ACCTTCAGCATGGGTACGATGCCATCAGACTCGCCATTGGTCCC 32239 || |||||||||| || | ||| | || | ||| ||||| || Sbjct 886811 ACTCTCAGCATGGGCACCAGGCCGTTGGAGTGGCCGTTGGTGCC 886854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921325487823560