Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14537 215 6e-51 seq14703 95.1 1e-14 seq7053 89.7 6e-13 seq3173 89.7 6e-13 >seq14537 Length=2063196 Score = 215 bits (238), Expect = 6e-51 Identities = 897/1393 (64%), Gaps = 48/1393 (3%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 885770 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 885829 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| ||| |||||||| | | || || || | ||| Sbjct 885830 GCGGTGGGCATGGGGGCCAGGAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCCTCTCC 885889 Query 116023 TTGAGGGCGTCCCAGTCGTA------GTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 || || | |||||| | | || || |||| |||| ||||| || || Sbjct 885890 TTCAGCTGCTGCCAGTCCCACAGCTCGGTGGGC---GTCTTCCCC---CACATGTCGTAC 885943 Query 116077 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 116134 ||||||| || | | |||| || || ||||| | |||| || |||||| | Sbjct 885944 TGGAGGACGCCCTTGCTGACG--GGGGAGCCCTCGTAGCTCTCGTAGGGGCCCAGCTCGG 886001 Query 116135 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCAT 116194 | |||| | | |||| ||||| ||||| |||| || || ||||| || || | | | Sbjct 886002 CGGCCAGCTGGCAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGGGTGT 886061 Query 116195 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGA 116254 ||| || |||||| | || |||| | || | || || | ||||| | Sbjct 886062 TCAGCAGCTGAGCCTCGGGGCTCTCGAACGGGTAGCGCATGAGGATGAAGGCGTCCGCCA 886121 Query 116255 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC-- 116312 | || ||||| |||| || || || || || | | | || || || ||| ||| Sbjct 886122 GCCCCTGGACGCCGATCCCGATGGGCCGGTGGCGCCTGTTGGAG---CGCTCGGCCTCGG 886178 Query 116313 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 116371 ||| || || | || | ||||| | | | || || ||| || || ||||| || | Sbjct 886179 GCACCGGGTAGTAGTTGATGTCGATGATCTTGTTCAGGTTTCTGACCACCACCTTGGTCA 886238 Query 116372 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 | ||||| | | | || || ||| ||| |||| ||| | || | Sbjct 886239 CGGCGGCCAGCTTGTGGAAGTCGAAGGTGCA---CTCGGGGGTGACGTACATGTTGAGCG 886295 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 |||| || ||||| || || || | ||| || | ||||| || | || |||| Sbjct 886296 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCGCTGCTGGTGTATTCCACGATCTCCG 886355 Query 116492 TACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 116551 | |||| || || || |||||||||| ||||| || || ||| |||| || | Sbjct 886356 TGCACAGGTTGCTGCTTTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 886415 Query 116552 CATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 116611 | || ||||||||||| || || || || || ||||| ||||||| || || || | || Sbjct 886416 CGTCTTTGTAGAGCATGTACGGGGTGCCGGTTTCCGTCTGGGACTCGATGATGGCGTGCC 886475 Query 116612 ATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGA 116671 | || | ||| ||| | ||| | || ||||||| |||||| ||||||| Sbjct 886476 ACACCTGCTGGGCCTTCACCACGCGCTTGACGCGGCCCTCCTTCTCGTAGGAGGTGTAGA 886535 Query 116672 GGGCCTCAAACTCTTCACCCACAGC-CTC-TGAGAGCCCTGGTGCCTT-ATCTGGACAGA 116728 | ||||||||| || ||| |||| ||| | |||| || || || || ||||| | Sbjct 886536 GCTTCTCAAACTCCTC-CCCCCAGCACTCGTTCAAGCC--GGGGCATTCGTCCGGACACA 886592 Query 116729 AGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAG 116786 |||||||| | || | ||| |||| ||||||||| | ||| ||||||||||| Sbjct 886593 TCAGAGACCA--GTCCTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCAGAG 886650 Query 116787 CGCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCA 116845 ||| |||| || |||| | | ||| || | ||||| || || || ||||| Sbjct 886651 CGCGTAGAACAGGTCCCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCA 886709 Query 116846 AAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGAC 116905 ||||| | || || |||||| || |||||||||| |||| | | || || | Sbjct 886710 GGAAGTCAAAGACGTCGAAGTGCCAGGGCTCCAGGTACATGGCGA-AGGCGCCGGGCCGC 886768 Query 116906 ----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATG 116961 || |||||| || || | ||||| ||| | || | ||||| || | Sbjct 886769 TTGTTCCCTCCCTGGTCCACGTAGCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGCACC 886828 Query 116962 ATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGG 117021 | || | || ||||| || || || || | | |||||| || | | Sbjct 886829 AGGCCGTTGGAGTGGCCGTTGGTGCCGGCGATGTAACTCCCCGTGGCTCGGATGCAGCTG 886888 Query 117022 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCG 117081 | | || || || ||||| ||| |||| ||||| | ||||||| | |||| || || Sbjct 886889 ACGGCCACGCCGATGCCCCCGGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCG 886948 Query 117082 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGC 117141 || || || ||||| ||| |||| | || | ||||||||||| |||| || ||| Sbjct 886949 TAAATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGC 887008 Query 117142 C--TTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGAC 117198 | |||||| || ||||||||||| || || | |||||| ||||| || | | ||| Sbjct 887009 CGGTTGGTG--CCTGCGTTGAAGAGCGTGGGCGAGGCGTGGGTGAAC-CACTTCTCCGAC 887065 Query 117199 ATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACC 117258 | | | |||||| || | | | | | ||||| | ||| || |||| |||||| Sbjct 887066 AGCAGGTTGTAGGTTTCGATGGCCGCGTCGATGTCGTTTTGGTGGATGCCGACGGAGACC 887125 Query 117259 CGCATAAACATGT 117271 | ||| | ||||| Sbjct 887126 CTCATCAGCATGT 887138 >seq14703 Length=1421099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Minus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 ||| ||||| ||||| |||| || ||||| |||| || || | ||| | ||||| Sbjct 453453 CTCGTCCTTGCTGGTGTATTCTACGATCTCCGTGCACAGGTTGCTGCA-TCTGA-TGGTG 453396 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| ||||| || || ||| |||| || || |||||||||||||| || ||||| Sbjct 453395 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 453336 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACATCGGC--GGCTGGCACAGTGG 116635 || || ||||||||||||| || || || | || ||| | || ||| ||| | Sbjct 453335 CCTGTTTCCGTTTGGGACTCGATGATGGCGTACC--ACAGCTGCTGGGCCTTCACCACGC 453278 Query 116636 CGTTGGCTCGCCCCTCCTCCTCGTAC 116661 |||||||| ||||||| ||||||| Sbjct 453277 GTTTGGCTCGGCCCTCCTTCTCGTAC 453252 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| ||| |||| ||||| |||| ||| ||||| |||||| Sbjct 454343 TAGATGTTGCTGGTGTAGGCCTCGAAGGACTCGTTGTTCCCCAGGATCTGGGCCGTGGAG 454284 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || ||||||||||| |||| || |||||||| Sbjct 454283 GCGGTGGGCATGGGAGCCAGCAGCAGGCTGTT 454252 >seq7053 Length=111041 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 46969 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 46910 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 46909 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 46861 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 51642 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 51701 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 51702 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 51750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 60563 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 60622 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 60623 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 60671 >seq3173 Length=1876 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 348 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 407 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 408 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613309550986680