Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq14557 138 1e-27 seq7053 111 2e-19 seq3173 111 2e-19 seq18908 107 2e-18 seq14196 91.5 1e-13 >seq14557 Length=1650391 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| | || || ||| ||| | Sbjct 91052 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCCAGC 90993 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 90992 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 90934 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 90933 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 90874 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | || ||||| ||||| || || Sbjct 90873 CATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGATTGAGGGGTGG 90826 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||||||||||||| |||| || ||| ||| Sbjct 91280 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTGGAGCCCAGT 91221 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 91220 GACAACATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 91162 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | |||||||| ||||||||| Sbjct 91161 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 91102 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || | || |||||| |||| || ||| Sbjct 91101 CATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGAGGC 91053 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| |||||||||||||| | || || ||| ||| | Sbjct 91508 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 91449 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || |||||| | || || Sbjct 91448 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 91390 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | |||||||| ||||||||| Sbjct 91389 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 91330 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || || || | || |||||| |||| || ||| Sbjct 91329 CATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGAGGC 91281 >seq7053 Length=111041 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 46336 ACCAGGTTCTCGTTGACGATCCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 46277 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||||| ||| |||| |||||||| || ||||||||||||||||||| Sbjct 46276 AAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 46217 Query 133399 T 133399 | Sbjct 46216 T 46216 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 61203 ACCAGGTTCTCGTTGACGATCCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 61262 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||||| ||| |||| |||||||| || ||||||||||||||||||| Sbjct 61263 AAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 61322 Query 133399 T 133399 | Sbjct 61323 T 61323 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||||| |||||||| | ||||||||||||||| || || Sbjct 46525 GTAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 46466 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || |||| ||||| ||||||||| || || | ||||||||| ||| Sbjct 46465 ACCGTAGAAACACCTGGCCTCCGTCACCTGCACCTCCTGGGTGAAACGCTCCACC 46411 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||||| |||||||| | ||||||||||||||| || || Sbjct 61014 GTAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 61073 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || |||| ||||| ||||||||| || || | ||||||||| ||| Sbjct 61074 ACCGTAGAAACACCTGGCCTCCGTCACCTGCACCTCCTGGGTGAAACGCTCCACC 61128 >seq3173 Length=1876 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||| ||||||||||||||||| ||||||| |||||| |||| Sbjct 969 ACCAGGTTCTCGTTGACGATCCCGTCGCTGGCGGCGAAGAAGGCCAACACGTGGGAGATG 1028 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | ||||| ||| |||| |||||||| || ||||||||||||||||||| Sbjct 1029 AAGAACCTCTCGTCGTCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTGGACAGGTCCACC 1088 Query 133399 T 133399 | Sbjct 1089 T 1089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||||||||| ||| ||||| |||||||| | ||||||||||||||| || || Sbjct 780 GTAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAA 839 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||||| || |||| ||||| ||||||||| || || | ||||||||| ||| Sbjct 840 ACCGTAGAAACACCTGGCCTCCGTCACCTGCACCTCCTGGGTGAAACGCTCCACC 894 >seq18908 Length=594 Score = 107 bits (118), Expect = 2e-18 Identities = 149/205 (73%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| |||||||||||||| | || || ||| ||| | Sbjct 375 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 434 Query 38304 GACAGC-GTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| || || |||||| | || || Sbjct 435 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCA 493 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| ||||| || || | |||||||| ||||||||| Sbjct 494 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAA 553 Query 38423 CATCCA-AAAGGAAGCGACGCTGCA 38446 ||| || |||| || || ||||| Sbjct 554 CATGCAGAAAGAGTGCCACCCTGCA 578 >seq14196 Length=26487 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGA--AAGTCAAGCCGGGCATGAGGCCGCGTTT 132974 ||||||||||| || || ||||| ||| | |||| ||| |||||||| || | ||| Sbjct 19533 CCTCGTCCCTGCTGATCAGCTCGTT--TGAATACGTCAGGCCTGGCATGAGTCCTCTTTT 19476 Query 132975 TTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAA 133034 || ||||| | |||| ||||| ||| || ||||||| |||||| || ||||| || Sbjct 19475 CTTCAGCCAGTAGATGGAAGCGAAGGAGCCGGAGAAGAAGATGCCCTCCACCGCCGCAAA 19416 Query 133035 AGCCACCAGGCGCTCGCC 133052 |||||||| ||||| || Sbjct 19415 TGCCACCAGCCGCTCCCC 19398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || ||||||||||||||||||||||||||||| ||||||| ||||| |||| Sbjct 18761 ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGACGTGTGAGATG 18702 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || ||| | || || | ||||||| | | ||| ||||||| ||||||| Sbjct 18701 AAGTGTTTCTCCTCAGGTTTTAAACTGTCCCAGTGGGCCAAGTCTTTGGACAAGTCCACC 18642 Query 133399 T 133399 | Sbjct 18641 T 18641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500011663080320