Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq14537 138 1e-27 seq7053 84.2 3e-11 seq3173 84.2 3e-11 >seq14537 Length=2063196 Score = 138 bits (152), Expect = 1e-27 Identities = 514/788 (65%), Gaps = 31/788 (4%) Strand=Plus/Minus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAA--GACCCCAAATGTCC 111761 ||||| |||||| | || || ||||||||||| || |||||| | || || ||||| Sbjct 887053 GTTCACCCACGCCTCGCCCACGCTCTTCAACGCAGG--CACCAACCGGCCGCAGCTGTCC 886996 Query 111762 AGTTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACT 111821 || || ||||| | || | ||||| || ||| | |||||||||| ||| |||| Sbjct 886995 AGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATTTACGACACGCTCAAG 886936 Query 111822 GAATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATG--TCA 111879 | || || | ||||| |||| ||| || || ||||| || | || | || || Sbjct 886935 CAGTGCGCGCTCATCTCCAAGTCGGCCGGGGGCATCGGCGTGGCCGTCA--GCTGCATCC 886878 Query 111880 GAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGC 111939 |||||| | | || || || || || || || | || | | || |||| Sbjct 886877 GAGCCACGGGGAGTTACATCGCCGGCACCAACGGCCACTCCAACGGCCTGGTGCCCATGC 886818 Query 111940 TTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGC----GTCGCAAGGGA 111995 | | || | ||| ||| || ||||| || |||| | ||| | || || Sbjct 886817 TGAGAGTTTACAACAACACGGCACGCTACGTGGACCAGGGAGGGAACAAGCGGCCCGGCG 886758 Query 111996 TCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGT 112055 || |||| | || || ||||| |||||| || || | || ||||| ||| || Sbjct 886757 CCT-TCGCCATGTACCTGGAGCCCTGGCACTTCGACGTCTTTGACTTCCTGGAGCTGAAG 886699 Query 112056 CTCAACCAAGGTGATGAGGAGGCGCGGTG---CCGCGATCTCTTCTCCGCTCTCTGGATT 112112 ||| | || || |||||| || | | | | || || |||| ||| |||||||| Sbjct 886698 AAGAAC-ACGGGGA--AGGAGGAGCAGAGAGCCAGGGACCTGTTCTACGCGCTCTGGATC 886642 Query 112113 CCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCA 112169 || || | ||||||||||| || |||||| | | |||||||| | ||||| Sbjct 886641 CCCGACTTGTTCATGAAGAGGGT---GGAGAGCAACCAGGACTGGTCTCTGATGTGTCCG 886585 Query 112170 GAC-AAGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAA 112227 ||| || || ||||| | ||| ||| | ||| ||||||||||| |||||||| Sbjct 886584 GACGAATGC-CCCGGCTTGAACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTCTACACCT 886527 Query 112228 AGTACGAGGAAGAAAGTCGGG-CGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286 |||||| | || | || | | | ||| |||| || | |||||| | || Sbjct 886526 CCTACGAGAAGGAGGGCCGCGTCAAGCGCGT-GGTGAAGGCCCAGCAGGTGTGGCACGCC 886468 Query 112287 ATTCTCAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAAC 112346 || || |||| || || || || || || || || ||||| |||||||||||||| ||| Sbjct 886467 ATCATCGAGTCCCAGACGGAAACCGGCACCCCGTACATGCTCTACAAAGACGCCTGCAAC 886408 Query 112347 CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATC 112406 ||||| || || |||| |||| ||||| || |||||| || || || ||| Sbjct 886407 AGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAAAGCAGCAACCTGTGCACGGAGATC 886348 Query 112407 TTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCC 112466 |||||| || || || ||| ||| || || ||||| || || ||||| ||| | Sbjct 886347 GTGGAATACACCAGCAGCGACGAGGTGGCCGTCTGCAACCTGGCCTCCATCGCGCTCAAC 886288 Query 112467 AAGTATGT 112474 | ||| || Sbjct 886287 ATGTACGT 886280 >seq7053 Length=111041 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || ||||| ||| || | ||||| ||||||||||| Sbjct 46861 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAGCGAGGC 46920 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 46921 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 46969 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || ||||| ||| || | ||||| ||||||||||| Sbjct 51750 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAGCGAGGC 51691 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 51690 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 51642 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || ||||| ||| || | ||||| ||||||||||| Sbjct 60671 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAGCGAGGC 60612 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 60611 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 60563 >seq3173 Length=1876 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||| ||||||||||| || ||||| ||| || | ||||| ||||||||||| Sbjct 456 GTGGAGGGAATCTTCTTCTCGGGCTCCTTTGCCGCCATCTTCTGGCTGAAGAAGCGAGGC 397 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 || ||||| || || ||||||||||||||| ||| | ||||||| Sbjct 396 CTGATGCCCGGCCTGACCTTCTCCAACGAGCTGATCAGCAGAGACGAGG 348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620542420076560