Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14557 91.5 1e-12 seq15044 86.0 5e-11 >seq14557 Length=1650391 Score = 91.5 bits (100), Expect = 1e-12 Identities = 158/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || ||||| || ||||| ||| | | ||| || ||||| || | || Sbjct 91059 CCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCGGACAGG 91116 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| || || || ||||| || || || ||||||||||| ||||| Sbjct 91117 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 91176 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| || || || || || || || |||||| | ||| || | | || || Sbjct 91177 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGTTGTCACTG-GGCTCCACCTC 91235 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || | ||||| ||||| || || || ||||| || ||||| Sbjct 91236 GAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91280 Score = 87.8 bits (96), Expect = 1e-11 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| ||||| || ||||| || ||||| ||| | | ||| || ||||| || | || Sbjct 91287 CCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGG--ATGTTGTAGTCGGACAGG 91344 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | ||||||||| || || || ||||| || || || ||||||||||| ||||| Sbjct 91345 GTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATG 91404 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| || || || || || || || |||||| || || || | | || || Sbjct 91405 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTG-GGCTCCACCTC 91463 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||| ||||| || || || || || || ||||| Sbjct 91464 AAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 91508 >seq15044 Length=2132835 Score = 86.0 bits (94), Expect = 5e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || || || || || ||||| || || ||||| || ||||||| Sbjct 2121926 ATGCCGTCATCACAGTTCCTGCGTACTTCAACGACTCCCAGCGCCAAGCCACCAAAGATG 2121867 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || ||||| || ||||| || || || ||||| ||||| ||||| || || Sbjct 2121866 CTGGGACCATCGCTGGGCTCAATGTGCTGCGCATCATCAACGAACCCACTGCAGCAGCCA 2121807 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 2121806 TCGCTTATGGCCTGGACAAA 2121787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027933007523770