Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq14557 125 6e-24 seq18908 98.7 8e-16 >seq14557 Length=1650391 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| |||||| || | || || ||||| ||||| || ||||| || || | Sbjct 91282 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91341 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || |||||||| || ||| Sbjct 91342 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91401 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| | || || Sbjct 91402 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACC 91461 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||||||||| | ||| || ||||| |||||||| Sbjct 91462 TCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 91508 Score = 113 bits (124), Expect = 3e-20 Identities = 171/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Plus Query 29544 ATCATTTTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTG 29603 || ||||||| || || |||||||| ||||| || | || || ||||| || || || Sbjct 90813 ATAATTTTAT---TGACCACCCCTCAATCGCAGGACAAGGTGGAGGGTGGACTCCTTCTG 90869 Query 29604 AATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCT 29663 ||||| || || | | |||||| ||| || || || ||||||||| | |||| || Sbjct 90870 GATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCT 90929 Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 |||||||| || ||||| || || ||||| || | || || || | || | || Sbjct 90930 CTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGT 90989 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| | || || ||||| || || ||||||||||| | ||| || || || ||||| Sbjct 90990 GTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTG 91049 Query 29784 CAT 29786 ||| Sbjct 91050 CAT 91052 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||||| |||||| || | || || ||||| ||||| || ||||| || || | Sbjct 91054 CCTCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGAC 91113 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || ||||||||| | |||| || |||||||| || ||| Sbjct 91114 AGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 91173 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| | || || Sbjct 91174 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGTTGTCACTGGGCTCCACC 91233 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || ||||||||||| | ||| || || || |||||||| Sbjct 91234 TCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 91280 >seq18908 Length=594 Score = 98.7 bits (108), Expect = 8e-16 Identities = 145/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGG-ATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 || || |||| | ||||| || ||||| || || | | |||||| ||| || || || Sbjct 578 TGCAGGGTGGCACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTG 519 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 ||||||||| | |||| || |||||||| || ||||| || || ||||| || | || Sbjct 518 CTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTT 459 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || || | || | ||||| | || || |||||||| || ||||||||||| Sbjct 458 GGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGT 399 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 | ||| || ||||| |||||||| Sbjct 398 GAGGGTCTTGACAAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385098199398993