Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq14555 214 2e-50 >seq14555 Length=2216418 Score = 214 bits (236), Expect = 2e-50 Identities = 557/831 (67%), Gaps = 34/831 (4%) Strand=Plus/Plus Query 162172 TCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGG 162231 ||||| | |||| ||||||||||||| | | || | ||| |||| || | ||| || Sbjct 878522 TCCCCTGCTCCGTACACGCACACGGATCTCCTGTAGTCCCCGGTGCAGGGTCGGTACGGG 878581 Query 162232 GCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGC 162291 ||||| | ||||| |||||| | |||| |||||| || | | | | ||| || Sbjct 878582 GCCCCCTGCTCCACGTCCCCCGCTAAGTAGCCCCACTTGACCACGCGCGCCAGGGCCAGC 878641 Query 162292 ATGTCGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTC 162351 ||||| || ||||||||||||| | ||||| | || || || | |||| ||| Sbjct 878642 ATGTCCGACGTGTCGTACTTGTCGTTGGGGGGCACCGACCCCGGGACCCGGGGCATCCTC 878701 Query 162352 TGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAAC 162411 || || || ||||||||||| ||||| || || | || |||||| |||||||| || | Sbjct 878702 TGCAGGGTGGCCCACAGGTGCTCGTCCGGGCTGAAGGTGTCCTTCTCCCACTCCAGGAGC 878761 Query 162412 TCCCTGACCGTTTTATC-GTATA-GAATGTAAGAG-ACGTAGGACCTGGTCACAATAAAG 162468 || ||| || || | | || | | || | | ||||| ||| | ||| Sbjct 878762 GCCTGCACCTCCGCGTCCGTCAACGCGTG---GTGCACAAACGCCCTGGACACCACGAAG 878818 Query 162469 TACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGG-CTCTTTGTCTTGACCCGT 162527 || ||| | || || |||| ||| || ||| || ||||| | ||| ||| | | || Sbjct 878819 TAGGCGTTCCCGGAGAACATGGGGGTGTTTATGGGCGGGGGGCCCTTGGTCGCGTCG-GT 878877 Query 162528 GTTGACTACCAT-TCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGG 162586 ||| ||| ||| | |||| ||| | | ||| | | || |||| | Sbjct 878878 CCGGACGACCTGATCCGT----GACCCGGTGGTGGTACTGCCAGCGGCCCTTCTT----G 878929 Query 162587 TAGACG--GGTGTTCG--GTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGC 162642 ||| || |||| || | ||| | ||||| | |||| || || || |||| || Sbjct 878930 TAGTCGTTGGTGGTCTCCGACTCCATGCTGTTGCTGCCCCTCAGGGTCTGCAGCGTCTGC 878989 Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| | ||||| || | ||| |||||| | ||||| || | | || ||| Sbjct 878990 ACCATCTCCCGGTTGGTTTTGATGGGGAAGTCGCTCCCGCATGTGTTCAGCAGGTACTTC 879049 Query 162703 CACTTAACGCTG--AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 |||| || ||| ||||| ||| || | |||||||| || ||||||||||| Sbjct 879050 CACTGGAC-CTGGGAGTCCAG-CAGGTCTCTCATGCAGTTCAGGTCCGCCTGGACGCGGG 879107 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 |||||||||||| || |||||||||| | | ||||| | || || ||| || || | Sbjct 879108 ACCACGACGCGTAGACCACGCTCTCCATCTTGGTGGCCAGGAACACGTTGGGGAGGCAGG 879167 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTAC 162878 | || || || ||||||| |||| ||| | | |||| || ||||| || Sbjct 879168 ACACGATGGCCCCCACGGCCGCCTTGAACTCATCCTGG--GATTTCTGGTCGACGTGGAC 879225 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 |||||| | ||||| |||| ||||||||||| ||| | | |||||||||||| ||||| Sbjct 879226 GCAGTAGATGTTCTGCGGGGTGTAGATGGCCCGCAGGAGCCGCTCGAACATCTCGATCTT 879285 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAA----CTCAGCCTCCTCGC 162985 | ||| | ||| || || ||||| |||||||| ||| ||||||||| Sbjct 879286 CTCGTGGATCACCATGGAGTACGCGATGGGGAAGTTCCTC-TCCTCCTCGC 879335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578245650900800