Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq14537 266 3e-66 seq14557 91.5 1e-13 seq18908 89.7 5e-13 seq14703 86.0 6e-12 >seq14537 Length=2063196 Score = 266 bits (294), Expect = 3e-66 Identities = 995/1539 (65%), Gaps = 46/1539 (3%) Strand=Plus/Plus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | || ||||| |||| |||||| | | || | ||||| ||| | | | Sbjct 885731 TTGACGATCTGGAACTCCCCCGACAGCACCCTGCGCGTGTAGATGTTGCTGGTGTAGGCC 885790 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| ||||| |||||| |||| Sbjct 885791 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATGGGGGCCAGG 885850 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || | || |||| | ||| | ||||||| |||||||||||| Sbjct 885851 AGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCCTCTCCTTCAGCTGCTGCCAGTCCCAC 885910 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | | | ||||||| |||||||||||||||||| || || ||| |||| | Sbjct 885911 AGCTCGGTGGGCGTCTTCCCCCACATGTCGTACTGGAGGACGCCCTTGCTGACGGGGGAG 885970 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCG-CCAATTCACAGCTTGCCTCGAGCGC 147191 || || | | |||| || || | ||| ||| | ||||| ||||| || || Sbjct 885971 CCCTCGTAGCTCTCGTAGGGGCCCA-GCTCGGCGGCCAGCTGGCAGCTGGCCTCCAGGGC 886029 Query 147192 TCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTA 147251 | ||||| ||||| ||| ||| || |||| || | || || ||||||| | Sbjct 886030 CGCGTAGTAGATGGTCTCGAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGGGCTCTCGAA 886089 Query 147252 AGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCG 147311 || |||| || | ||||| || |||| ||||||| |||| ||||| || || Sbjct 886090 CGGGTAGCGCATGAGGATGAAGGCGTCCGCCAGCCCCTGGACGCCGATCCCGATGGGCCG 886149 Query 147312 ATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTGGTTGCGATCAATAATCT 147370 || |||| ||||| || |||| | || |||| |||| || || |||| Sbjct 886150 GTGGCGCCTGTTGGAGCGCTCGGC-CTCGGGCACCGGGTAGTAGTTGATGTCGATGATCT 886208 Query 147371 TGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC 147430 |||| ||||| | || || || || || | | || || | ||| || | || | Sbjct 886209 TGTTCAGGTTTCTGACCACCACCTTGGTCACGGCGGCCAGCTTGTGGAAGTCGAAGGTGC 886268 Query 147431 CGTCTTCGAC-ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTC 147489 || | |||||| || ||| | ||||| || ||||| |||||||||||| | Sbjct 886269 ACTCGGGGGTGACGTAC--AT--GTTGAGCGCGATGGAGGCCAGGTTGCAGACGGCCACC 886324 Query 147490 TCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCC 147549 || ||| | | |||| | |||||| || | |||||||||||||| ||| ||| ||| Sbjct 886325 TCGTCGCTGCTGGTGTATTCCACGATCTCCGTGCACAGGTTGCTGCTTTTGATGGTGCCC 886384 Query 147550 AAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCG 147609 | || ||||| ||||| |||| ||||| ||||||||| ||||||||||||| |||| Sbjct 886385 AGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGGGTGCCG 886444 Query 147610 GTCTCGACTTGCGTTTCAACGAT--------AAACCTATGCAGGTCCTGCGCTCGCACCC 147661 || || || | || | ||| | ||| ||| || ||| | | ||| | Sbjct 886445 GTTTCCGTCTGGGACTCGATGATGGCGTGCCACACC--TGCTGGGCCTTCAC---CACGC 886499 Query 147662 GCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGT 147721 ||| || ||||||||| || ||||| ||| | | ||||||||| || || Sbjct 886500 GCT--TGA-CGCGGCCCTCCTTCTCGTAGGAGGTGTAGAGCTTCTCAAACTCCTCCCCCC 886556 Query 147722 AGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGT 147781 |||| ||| | |||||| || | | |||||||||||| ||||| | || | Sbjct 886557 AGCACTCGTTCAAGCCGGGGCATTCGTCCGGACACATCAGAGACCAGTCCTGGTTGCTCT 886616 Query 147782 TAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTT 147839 || | ||| |||| || || | ||| |||||||| | || || | || || | Sbjct 886617 CCACCCTCTTCATGAACAAGTCGGGGATCCAGAGCGCGTAGAACAGGTCCCTGGCTCTCT 886676 Query 147840 GCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCA 147899 || ||||| ||| |||| |||| | || | | | ||| |||| |||||| Sbjct 886677 GC--TCCTCCTTCCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGACGTCGAAGTGCCA 886734 Query 147900 GGGTTCAATGTAGACGGCCAGCGCACCTTTACGC---TTTCCGCCCTGGTCGACATGGCG 147956 ||| || | ||| | ||| | || || ||| || || |||||||| || | ||| Sbjct 886735 GGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTTGTTCCCTCCCTGGTCCACGTAGCG 886794 Query 147957 CACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGT-GCCGTTGGTGG 148015 || ||||||| | || | || |||||| |||||||| | | ||| |||||||||| Sbjct 886795 TGCCGTGTTGTTGTAAACTCTCAGCATGGGCACCAGGCCG-TTGGAGTGGCCGTTGGTGC 886853 Query 148016 AATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACGCCAATGCCGCCGCCGT 148075 ||| | || || |||||| | | ||| ||||| ||||| ||| | Sbjct 886854 CGGCGATGTAACTCCCCGTGGCTCGGATGCAGCTGACGGCCACGCCGATGCCCCCGGCCG 886913 Query 148076 ACTTTGATATGGCAGCGCAATCGCCCAA---TGTCGTGTAGATGCCGTCGATGCTGTCGT 148132 |||| || ||| ||||| | || | |||| ||| ||||| ||||||||||||| Sbjct 886914 ACTTGGAGATGAGCGCGCACT-GCTTGAGCGTGTC--GTAAATGCCCTCGATGCTGTCGT 886970 Query 148133 TTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---CGTTCCCGCCGAGA 148189 || | | | |||| || || ||| ||||| ||| || || || || Sbjct 886971 CCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGG---CCGGTTGGTGCCTGCGTTGA 887027 Query 148190 AAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAG 148249 | || ||||| ||||| || ||| | || | || || | || || || || | Sbjct 887028 AGAGCGTGGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTTTCGATGG 887087 Query 148250 CGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTC 148309 | | |||||||||| ||| ||||| | | ||| | ||| ||||||||||| || | Sbjct 887088 CCGCGTCGATGTCGTTTTGGTGGATGCCGACGGAGACCCTCATCAGCATGTGCTGCGGCC 887147 Query 148310 GTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACCAA 148369 | ||||| |||| ||||||||| || || || || ||||| ||| | || | Sbjct 887148 GCTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGAGCGCTCCAGGGTCTTGAAGCCGA 887207 Query 148370 AGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 || | ||||| |||||| | ||||| |||||||| Sbjct 887208 AGAAGTTGTACGAAAAATCGCGGTCGTAGATGATGGCCG 887246 >seq14557 Length=1650391 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 90859 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCA 90918 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || || |||| Sbjct 90919 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 90978 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | ||||| ||||| || || || Sbjct 90979 TTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTGCCAGTGAGGGTCTTG 91038 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 91039 ACGAAGATCTGCATGCCT 91056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 91087 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCA 91146 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || || |||| Sbjct 91147 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 91206 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | | || | |||||||| |||| || | ||||| ||||| || || || Sbjct 91207 TTCTCAATGTTGTCACTGGGCTCCACCTCGAGGGTGATGGTTTTGCCAGTGAGGGTCTTG 91266 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 91267 ACGAAGATCTGCATGCCT 91284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 91315 GACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCA 91374 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| ||||| || || |||||||| || || || || |||| Sbjct 91375 AAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACG 91434 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | ||||| ||||| || || || Sbjct 91435 TTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTG 91494 Query 132110 ATGAAAATCTGCATG 132124 | || ||||||||| Sbjct 91495 ACAAAGATCTGCATG 91509 >seq18908 Length=594 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131931 ACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAAT 131990 ||||||| || |||||||||||| || ||| || |||||| ||||| || || | | Sbjct 567 ACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCCAGCAA 508 Query 131991 AGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACT 132050 |||| || | ||| ||||| || || |||||||| || || || || |||| | Sbjct 507 AGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGT 448 Query 132051 GTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTA 132110 || | || ||| | |||||||| || | || | ||||| ||||| || || || | Sbjct 447 TCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCCAGTGAGGGTCTTGA 388 Query 132111 TGAAAATCTGCATG 132124 || ||||||||| Sbjct 387 CAAAGATCTGCATG 374 >seq14703 Length=1421099 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||| | ||||| || | |||||||||||||||| | ||| |||| || ||||| | Sbjct 453439 TGTATTCTACGATCTCCGTGCACAGGTTGCTGCATCTGATGGTGCCCAGGTTCTGCTGGT 453380 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| ||||| ||||| ||| ||||||||||||| Sbjct 453379 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGG 453340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476457653744280