Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq14537 201 1e-46 seq14703 96.9 4e-15 seq7053 89.7 6e-13 seq3173 89.7 6e-13 >seq14537 Length=2063196 Score = 201 bits (222), Expect = 1e-46 Identities = 888/1389 (64%), Gaps = 40/1389 (3%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 885770 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 885829 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| ||| |||||||| | | || | || | ||| Sbjct 885830 GCGGTGGGCATGGGGGCCAGGAGCAGGCTGTTCCTCACGCCGTGCCGGGCGATCCTCTCC 885889 Query 118302 TTGAGAGCGTCCCAGTCGTA------GTTGAGCTTTGTCTCCCCCTGCCACATATCAAAC 118355 || || | |||||| | | || || |||| |||| ||||| || || Sbjct 885890 TTCAGCTGCTGCCAGTCCCACAGCTCGGTGGGC---GTCTTCCCC---CACATGTCGTAC 885943 Query 118356 TGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCT 118413 ||||||| || | | |||| || || ||||| | |||| || |||||| | Sbjct 885944 TGGAGGACGCCCTTGCTGACG--GGGGAGCCCTCGTAGCTCTCGTAGGGGCCCAGCTCGG 886001 Query 118414 CCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCAT 118473 | |||| | | |||| ||||| ||||| |||| || || || || || || | | | Sbjct 886002 CGGCCAGCTGGCAGCTGGCCTCCAGGGCCGCGTAGTAGATGGTCTCGAAGATCTGGGTGT 886061 Query 118474 TCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGA 118533 ||| || |||||| | || |||| | || | || || | ||||| | Sbjct 886062 TCAGCAGCTGAGCCTCGGGGCTCTCGAACGGGTAGCGCATGAGGATGAAGGCGTCCGCCA 886121 Query 118534 GACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-- 118591 | || ||||| |||| || || || || || | | | || || || ||| ||| Sbjct 886122 GCCCCTGGACGCCGATCCCGATGGGCCGGTGGCGCCTGTTGGAG---CGCTCGGCCTCGG 886178 Query 118592 -CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGA 118650 ||| || || | || | ||||| | | | || || ||| || || ||||| || | Sbjct 886179 GCACCGGGTAGTAGTTGATGTCGATGATCTTGTTCAGGTTTCTGACCACCACCTTGGTCA 886238 Query 118651 TTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 118710 | ||||| | | | || || ||| ||| |||| ||| | || | Sbjct 886239 CGGCGGCCAGCTTGTGGAAGTCGAAGGTGCA---CTCGGGGGTGACGTACATGTTGAGCG 886295 Query 118711 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 118770 |||| || ||||| || || || | ||| || | ||||| || | || |||| Sbjct 886296 CGATGGAGGCCAGGTTGCAGACGGCCACCTCGTCGCTGCTGGTGTATTCCACGATCTCCG 886355 Query 118771 TGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACG 118830 |||||| ||| || || |||||||||| ||||| || || ||| |||| || | Sbjct 886356 TGCACAGGTTGCTGCTTTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 886415 Query 118831 CATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCC 118890 | || ||||| |||||||| || || || || ||||| ||||||| || || || | || Sbjct 886416 CGTCTTTGTAGAGCATGTACGGGGTGCCGGTTTCCGTCTGGGACTCGATGATGGCGTGCC 886475 Query 118891 AGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 | || | || ||| | ||| | || ||||| | |||||| ||||||| Sbjct 886476 ACACCTGCTGGGCCTTCACCACGCGCTTGACGCGGCCCTCCTTCTCGTAGGAGGTGTAGA 886535 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTA-TCTGGGCAGAA 119008 | |||||||| || ||| | ||| | |||| || || || || || || | Sbjct 886536 GCTTCTCAAACTCCTCCCCCCAGCACTCGTTCAAGCC--GGGGCATTCGTCCGGACACAT 886593 Query 119009 GAGAGACCATTGACCACCCTCCTCA--ACCCGCTTCATGAAGAGGTCTGGGATCCAGAGC 119066 |||||||| | || | ||| |||| ||||||||| | ||| |||||||||||| Sbjct 886594 CAGAGACCAGT--CCTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCAGAGC 886651 Query 119067 GCCGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAA 119125 || |||| || |||| | | ||| || | ||||| || || || ||||| Sbjct 886652 GCGTAGAACAGGTCCCTGGCTCTCTGCTCCTCCTTCCCCGTG-TTCTTCTTCAGCTCCAG 886710 Query 119126 AAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG 119185 ||||| | || || |||||| || |||||||||| |||| | || || Sbjct 886711 GAAGTCAAAGACGTCGAAGTGCCAGGGCTCCAGGTACATGGCGAAGGCGCCGGGCCGCTT 886770 Query 119186 A---CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 || |||||| || || | || ||| ||| | || | ||||| || | | Sbjct 886771 GTTCCCTCCCTGGTCCACGTAGCGTGCCGTGTTGTTGTAAACTCTCAGCATGGGCACCAG 886830 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 || | ||| ||||| || || || || | | |||||| || | || Sbjct 886831 GCCGTTGGAGTGGCCGTTGGTGCCGGCGATGTAACTCCCCGTGGCTCGGATGCAGCTGAC 886890 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 | || || || ||||| ||| |||| ||||| ||||||||| | |||| || |||| Sbjct 886891 GGCCACGCCGATGCCCCCGGCCGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTA 886950 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 || || ||||| ||| |||| | || | ||||||||||| |||| || |||| Sbjct 886951 AATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAGCTGGACAGCTGCGGCCG 887010 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481 | || || ||||||||||| || || | |||||| ||||| || | | |||| | Sbjct 887011 GTTGGTGCCTGCGTTGAAGAGCGTGGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCA 887069 Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541 || |||||| || | | | ||| ||||| | ||| || |||| ||||||| || Sbjct 887070 GGTTGTAGGTTTCGATGGCCGCGTCGATGTCGTTTTGGTGGATGCCGACGGAGACCCTCA 887129 Query 119542 TAAACATGT 119550 | | ||||| Sbjct 887130 TCAGCATGT 887138 >seq14703 Length=1421099 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/209 (71%), Gaps = 14/209 (7%) Strand=Plus/Minus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTG 118796 ||| ||||| ||||| |||| || |||||||||| ||| || | ||| | ||||| Sbjct 453453 CTCGTCCTTGCTGGTGTATTCTACGATCTCCGTGCACAGGTTGCTGCA-TCTGA-TGGTG 453396 Query 118797 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 118856 |||| ||||| || || ||| |||| || || |||||||| |||||||| ||||| Sbjct 453395 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTG 453336 Query 118857 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCAGCTGG-----CACAG 118911 || || ||||||||||||| || || || | ||| | || ||||| ||| Sbjct 453335 CCTGTTTCCGTTTGGGACTCGATGATGGCGTACCA-----CAGCTGCTGGGCCTTCACCA 453281 Query 118912 TGGCGTTGGCTCGCCCCTCTTCCTCGTAC 118940 | |||||||| ||||| | ||||||| Sbjct 453280 CGCGTTTGGCTCGGCCCTCCTTCTCGTAC 453252 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| ||| |||| ||||| |||| ||| ||||| |||||| Sbjct 454343 TAGATGTTGCTGGTGTAGGCCTCGAAGGACTCGTTGTTCCCCAGGATCTGGGCCGTGGAG 454284 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 || ||||||||||| |||| || |||||||| Sbjct 454283 GCGGTGGGCATGGGAGCCAGCAGCAGGCTGTT 454252 >seq7053 Length=111041 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 46969 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 46910 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 46909 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 46861 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 51642 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 51701 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 51702 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 51750 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 60563 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 60622 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 60623 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 60671 >seq3173 Length=1876 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||| || || || |||||| ||| || ||||| || || ||||||| Sbjct 348 CCTCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCT 407 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| || || ||| ||||| ||||||||||| |||||||| Sbjct 408 TCAGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCAC 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618235963369880