Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq14537 273 2e-68 seq15041 86.0 7e-12 seq7053 84.2 2e-11 >seq14537 Length=2063196 Score = 273 bits (302), Expect = 2e-68 Identities = 485/701 (69%), Gaps = 10/701 (1%) Strand=Plus/Minus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| |||| || || |||||||| || || || | || ||| || Sbjct 887058 AAGTGGTTCACCCACGCCTCGCCCACGCTCTTCAACGCAGGCACCAACCGGCCGCAGCTG 886999 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| |||| |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 886998 TCCAGCTGCTTCCTGCTGGCCATGAAGGACGACAGCATCGAGGGCATTTACGACACGCTC 886939 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT---CCACTGCTCGAAC 53443 ||| |||| || | ||||||||||| | | || || ||||| | | | ||| | Sbjct 886938 AAGCAGTGCGCGCTCATCTCCAAGTCGGCCGGGGGCATCGGCGTGGCCGTCAGCTGCA-- 886881 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 |||| || | || | ||| || || |||||| | || | || | ||||| Sbjct 886880 -TCCGAGCCACGGGGAGTTACATCGCCGGCACCAACGGCCACTCCAACGGCCTGGTGCCC 886822 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | |||||||||||| || ||||| ||||||| || ||||| Sbjct 886821 ATGCTGAGAGTTTACAACAACACGGCACGCTACGTGGACCAGGGAGGGAACAAGCGGCCC 886762 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | |||||||| ||||| ||||| |||||| |||| | | || || || |||||| Sbjct 886761 GGCGCCTTCGCCATGTACCTGGAGCCCTGGCACTTCGACGTCTTTGACTTCCTGGAGCTG 886702 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGAT 53682 ||| ||| | || ||| | | | | |||||||| ||| || || ||||| Sbjct 886701 AAGAAGAACACGGGGAAGGAGGAGCAGAGAGCCAGGGACCTGTTCTAC-GCGCTCTGGAT 886643 Query 53683 TCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAA 53742 || ||| | |||||| | | |||||||| || |||| |||| |||||||| ||| | Sbjct 886642 CCCCGACTTGTTCATGAAGAGGGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCGGA 886583 Query 53743 CGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGT 53801 ||| ||||||||| | | | ||| || || ||||||||| | || | || | | Sbjct 886582 CGAATGCCCCGGCTTGAACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTCTACACCTCCT 886524 Query 53802 ACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 ||| |||||||| |||| ||| ||||| | |||| ||| | || ||| Sbjct 886523 ACGAGAAGGAGGGCCGCGTCAAGCGCGTGGTGAAGGCCCAGCAGGTGTGGCACGCCATCA 886464 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 || || |||| ||| || || || ||||||||| |||||| || | |||| || Sbjct 886463 TCGAGTCCCAGACGGAAACCGGCACCCCGTACATGCTCTACAAAGACGCCTGCAACAGGA 886404 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||||| ||||| | ||| ||||||| |||||| Sbjct 886403 AGAGCAACCAGCAGAACCTGGGCACCATCAAAAGCAGCAAC 886363 Score = 104 bits (114), Expect = 3e-17 Identities = 341/520 (66%), Gaps = 29/520 (6%) Strand=Plus/Minus Query 55139 AACCTGAACCGGGTCATCGACAAGAATTACTACCCGA---CTGAAGCGGCGCGCAAGTCC 55195 ||||||||| | ||||||||| || ||||||||| | || || | |||| ||| Sbjct 886218 AACCTGAACAAGATCATCGACATCAACTACTACCCGGTGCCCGAGGCCGAGCGC---TCC 886162 Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255 ||| || ||||||||||||| ||||| || ||||| |||| ||| |||||| | Sbjct 886161 AACAGGCGCCACCGGCCCATCGGGATCGGCGTCCAGGGGCTGGCGGACGCCTTCATCCTC 886102 Query 55256 CTCGGATTGCCCTTCGA---CTCGGAACCT--GCTCGAGAAATTAACCAGGACATCTTC- 55309 | | | || ||||| | | || || ||| ||| | |||| |||||| Sbjct 886101 ATGCGCTACCCGTTCGAGAGCCCCGAGGCTCAGCTGCTGAAC--ACCCAG---ATCTTCG 886047 Query 55310 AGTCGCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGAC 55368 || | |||||||| || || || |||| || || ||||| |||| ||| | Sbjct 886046 AGAC-CATCTACTACGCGGCCCTGGAGGCCAGCTGCCAGCTGGCCGCCGAGCT-GGGCCC 885989 Query 55369 CTACGAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGG 55428 |||||||| | | | || || | |||||| | ||||||| ||| | ||||| Sbjct 885988 CTACGAGAGCTACGAGGGCTCCCCCGTCAGCAAGGGCGTCCTCCAGTACGACATGTGGGG 885929 Query 55429 CAAGTCTGACCCCATGTT-------TGACA--AGTTGAAGCATGACATTCACTTGTGGGG 55479 ||| | | || | | || || || ||||| | || | | || Sbjct 885928 GAAGACGCCCACCGAGCTGTGGGACTGGCAGCAGCTGAAGGAGAGGATCGCCCGGCACGG 885869 Query 55480 CCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGG 55539 | | | ||| ||||||| |||| || ||||| ||||| || || || |||||| |||| Sbjct 885868 CGTGAGGAACAGCCTGCTCCTGGCCCCCATGCCCACCGCCTCCACCGCCCAGATCCTGGG 885809 Query 55540 CAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGG 55599 |||||||||| | ||||| | ||||| | |||||||||| |||| || || | || Sbjct 885808 CAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACGCGCAGGGTGCTGTCGGG 885749 Query 55600 TGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || ||||| ||||| ||||||||||| Sbjct 885748 GGAGTTCCAGATCGTCAACCCCCACCTGCTCAAGGACCTG 885709 >seq15041 Length=518841 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACT-G 152087 ||||||||||| |||| |||||| || |||||||| || | || || || |||| | Sbjct 133380 GTGAAGATGTAACGGGGGCTGGCGGCGTCCTTGCCTCCGTTGATGCGAGTCCCGAACTGG 133321 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| |||| ||| ||||||||| ||||||||| ||||| |||| || || Sbjct 133320 CCCAGA-GGCTGCAGGATGTTCAGGTTGTTGCTGCCCACGAAGTTCTGGGCCAGGTTGAC 133262 Query 152148 AATCGT 152153 || || Sbjct 133261 GATGGT 133256 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || | || || ||||| || Sbjct 133380 GTGAAGATGTAACGGGGGCTGGCGGCGTCCTTGCCTCCGTTGATGCGAGTCCCGAACTGG 133321 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||||||||||| |||||| ||||| || |||| |||||| Sbjct 133320 CCCAGAGGCTGCAGGATGTTCAGGTTGTTGCTGCCCACGAAGTTCTGGGCCAGGTTGACG 133261 Query 117425 ATCGT 117429 || || Sbjct 133260 ATGGT 133256 >seq7053 Length=111041 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| |||||||||||||| |||| |||||||||||||| Sbjct 47660 TACTCGCCCACTCTCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAGATGTTCTCCATG 47601 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||||||||||| || | ||| || Sbjct 47600 AAGTCGAAAGGGTTCTCGGCCCGGTAGAT 47572 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| |||||||||||||| |||| |||||||||||||| Sbjct 50952 TACTCGCCCACTCTCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAGATGTTCTCCATG 51011 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||||||||||| || | ||| || Sbjct 51012 AAGTCGAAAGGGTTCTCGGCCCGGTAGAT 51040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || | ||| ||||| |||||||||||||| |||| |||||||||||||| Sbjct 59875 TACTCGCCCACTCTCTTCTCAAAGAAGTTGGTCTTCCCCTCCAGAGAGATGTTCTCCATG 59934 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||||||||||| || | ||| || Sbjct 59935 AAGTCGAAAGGGTTCTCGGCCCGGTAGAT 59963 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547039707525400