Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14537 288 1e-72 seq14557 163 3e-35 seq18908 140 4e-28 seq15041 96.9 4e-15 seq14703 82.4 9e-11 >seq14537 Length=2063196 Score = 288 bits (318), Expect = 1e-72 Identities = 819/1240 (66%), Gaps = 38/1240 (3%) Strand=Plus/Plus Query 80539 CCCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 ||||||||||||| ||| | || ||||| | |||| |||| ||| || | |||||| Sbjct 885929 CCCCACATGTCGTACTGGAGGACGCCCTTGCTGACGGGGGAG--CCCTCGTAGCTCTCGT 885986 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACTCCATAAGGGCCGCGTGATAAATGC 80653 | |||||| | |||||||| || | ||||| ||||||||| || ||| Sbjct 885987 AGGGGCCCAGCTCGGCGGCCAGCTGGCAGCTGGCCTCCA---GGGCCGCGTAGTAGATGG 886043 Query 80654 ACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATC 80712 ||| |||| |||||| | || | |||| ||| ||||||| ||| ||| Sbjct 886044 TCTCGAAGATCTGGGTGTTCAG-CAGCTGAGCCTCGGGGCTCTCGAACGGGTAGCGCATG 886102 Query 80713 ATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTC 80772 | ||||| |||| ||||| ||||| |||||||| |||| || ||||||||| |||| Sbjct 886103 AGGATGAAGGCGTCCGCCAGCCCCTGGACGCCGATCCCGATGGGCCGGTGGCGCCTGTTG 886162 Query 80773 GATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGT 80832 || ||||||||||| || | ||||| |||| | ||||||| ||||||||| | Sbjct 886163 GAGCGCTCGGCCTCGGGCACCGGGTAGTAGTTGATGTCGATGATCTTGTTCAGGTTTCTG 886222 Query 80833 GTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAAT 80892 || ||| || || | || || || |||||||| ||| | | || | Sbjct 886223 ACCACCACCTTGGTCACGGCGGCCAGCTTGTGGAAGTCGAA--GGTGCAC--TCGGGGGT 886278 Query 80893 GCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTG- 80944 | || | | | | || ||| ||||| ||||| ||||||||||| || || ||| Sbjct 886279 GACGTACATGTTGAGCGCGATGGAGGCCAGGTTGCAGACGGCCACCTCGTC-GCTGCTGG 886337 Query 80945 TAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGT 81004 | | || ||||| |||||||||| || || || || |||||||| | ||||| Sbjct 886338 TGTATTCCACGATCTCCGTGCACAGGTTGCTGCTTTTGATGGTGCCCAGGTTCTGCTGGT 886397 Query 81005 TTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTG 81064 | ||| |||||| ||||| |||||| |||||||||||| ||||| || ||| | Sbjct 886398 TGCTCTTCCTGTTGCAGGCGTCTTTGTAGAGCATGTACGGGGTGCCGGTTTCCGTCTGGG 886457 Query 81065 ACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCG---GAATTTGCCTT 81121 ||| || |||||||| ||| | || | ||||| ||||| ||| || ||| | Sbjct 886458 ACTCGATGATGGCGTGCCACACCTGCTGGGCCTTCACCAC---GCGCTTGACGCGGCCCT 886514 Query 81122 CGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCT 81180 | | | || || ||| |||||| || |||| | || || | | | | Sbjct 886515 CCTTCTCGTAGGAGGTGTAGAGCTTC-TCAAACTCCTCCCCCCAGCACTCGTTCAAGCCG 886573 Query 81181 GGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAA 81240 ||||| |||| || |||||||| |||||| || | |||| || ||||||||| Sbjct 886574 GGGCATTCGTCCGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACCCTCTTCATGAAC 886633 Query 81241 GCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGG 81300 ||| ||||||||||| ||| ||||||||| | | | | |||||| | ||| | Sbjct 886634 AAGTCGGGGATCCAGAGCGCGTAGAACAGGTCCCTGGCTCTCTGCTCCTCCTTCCCCGTG 886693 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || || ||| || ||||| | || ||| ||||| |||||||| |||| |||| Sbjct 886694 TTCTTCTTCAGCTCCAGGAAGTCAAAGACGTCGAAGTGCCAGGGCTCCAGGTACATGGCG 886753 Query 81361 ATCGACCCCTTGCGACGG---CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACA 81417 | | || || | || ||||||| ||||| || || || ||| | || Sbjct 886754 AAGGCGCCGGGCCGCTTGTTCCCTCCCTGGTCCACGTAGCGTGCCGTGTTGTTGTAAACT 886813 Query 81418 CGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTG 81477 | || ||| || | | || | || || ||||| || || |||| |||| || Sbjct 886814 CTCAGCATGGGCACCAGGCCGTTGGAGTGGCCGTTGGTGCCGGCGATGTAACTCCCCGTG 886873 Query 81478 GCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACAC 81537 || || | ||||| | | |||||||| || | | |||| || || | || ||| Sbjct 886874 GCTCGGATGCAGCTGACGGCCACGCCGATGCCCCCGGCCGACTTGGAGATGAGCGCGCAC 886933 Query 81538 CGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAG 81597 | || | || || ||||| ||||||||||| || | |||||| | |||| ||| ||| Sbjct 886934 TGCTTGAGCGTGTCGTAAATGCCCTCGATGCTGTCGTCCTTCATGGCCAGCAGGAAGCAG 886993 Query 81598 CTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAA 81657 || |||| ||| || | || | ||| || ||||| || || || | ||||| |||| Sbjct 886994 CTGGACAGCTGCGGCCGGTTGGTGCCTGCGTTGAAGAGCGTGGGCGAGGCGTGGGTGAAC 887053 Query 81658 TAACGGTTTGACATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAAT 81716 | | |||| ||||| |||||||| | | ||||| | || |||| ||| || Sbjct 887054 CACTTCTCCGACAGCAGGTTGTAGGTTTCGATGGCCGCGTCG-ATGTCGTTTTGGTGGAT 887112 Query 81717 ACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 |||| | || | ||| | ||||| ||| ||| |||| Sbjct 887113 GCCGACGGAGACCCTCATCAGCATGTGCTGCGGCCGCTCG 887152 >seq14557 Length=1650391 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||| || || ||||||||||| ||| | | Sbjct 91508 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 91449 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 91448 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 91389 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 91388 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 91329 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 91328 ATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCT 91291 Score = 156 bits (172), Expect = 5e-33 Identities = 182/245 (74%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || |||||||| ||| | | Sbjct 91052 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTTGAGGTGGAGCCCAGC 90993 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 90992 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 90933 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 90932 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 90873 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 |||| ||||| ||||| || || || ||| |||| | | ||||| ||| |||| | Sbjct 90872 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGATTGAGGGGTGGTCAA---TAAAAT 90816 Query 27646 TTTTC 27650 | ||| Sbjct 90815 TATTC 90811 Score = 154 bits (170), Expect = 2e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || || ||||| ||| | || Sbjct 91280 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAAACCATCACCCTCGAGGTGGAGCCCAGT 91221 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 91220 GACAACATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 91161 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 91160 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 91101 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 91100 ATCCAGAAAGAGTCCACCCTCCACCTTGTCCTGCGTCT 91063 >seq18908 Length=594 Score = 140 bits (154), Expect = 4e-28 Identities = 156/207 (75%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || ||||| || || ||||||||||| ||| | | Sbjct 375 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAAACCATCACTCTTGAGGTGGAGCCCAGC 434 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || ||||||||||| || ||||| || || ||| Sbjct 435 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAG 494 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | ||||| || Sbjct 495 CAGAGGCTGATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAAC 554 Query 27586 GTCCAAAAGGAAT-CCACTCTTCATCT 27611 | || || || | |||| || || || Sbjct 555 ATGCAGAAAGAGTGCCACCCTGCACCT 581 >seq15041 Length=518841 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/127 (78%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 ||||| |||||||| || |||||||| || || || ||||||||| | || |||| Sbjct 133256 ACCATCGTCAACCTGGCCCAGAACTTCGTGGGCAGCAACAACCTGAACATCCTGCAGCC- 133314 Query 32185 TCTGGAC-AGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACAT 32243 ||||| | |||| ||||| || || ||| |||||||| || || ||| |||||||||| Sbjct 133315 TCTGGGCCAGTTCGGGACTCGCATCAACGGAGGCAAGGACGCCGCCAGCCCCCGTTACAT 133374 Query 32244 CTTCACC 32250 ||||||| Sbjct 133375 CTTCACC 133381 >seq14703 Length=1421099 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 || ||||| |||||||||| || | | || || |||||||| | |||||| | Sbjct 453434 TCTACGATCTCCGTGCACAGGTTGCTGCATCTGATGGTGCCCAGGTTCTGCTGGTTGCTC 453375 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 || |||||| |||||||||||| ||||||||| || || || || || |||| | Sbjct 453374 TTCCTGTTGCAGGCGTCCTTGTAGAGCATGTACGGCGTGCCTGTTTCCGTTTGGGACTCG 453315 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 | |||||||| ||| | || | ||||| ||||| Sbjct 453314 ATGATGGCGTACCACAGCTGCTGGGCCTTCACCAC 453280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570126667375760