Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq14555 385 6e-102 seq9568 89.7 7e-13 >seq14555 Length=2216418 Score = 385 bits (426), Expect = 6e-102 Identities = 670/971 (69%), Gaps = 14/971 (1%) Strand=Plus/Minus Query 13615 TGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTGAGGCCCC 13674 ||||| |||||||||||||| | ||| |||| | | | ||||| || | ||||| Sbjct 879398 TGAACGCGACGGCCGACTGCGCGTCCTACGTGGAGAGCCGAGGGTACATCACGGAGCCCC 879339 Query 13675 TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCG 13734 ||||| ||| ||| | || |||||||| ||||| || ||||||||| | ||||||| Sbjct 879338 TGAGCGAGGAGGAGAGGAACTTCCCCATCGCGTACTCCATGGTGATCCACGAGAAGATCG 879279 Query 13735 AGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACG 13794 ||||||||||||| |||||| ||||||||||| ||||||||||| ||||||||||||||| Sbjct 879278 AGATGTTCGAGCGGCTCCTGCGGGCCATCTACACCCCGCAGAACATCTACTGCGTCCACG 879219 Query 13795 TGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCC 13854 | ||| || ||| || ||||||| || ||| |||||||| ||| ||| Sbjct 879218 TCGACCAGAAATCCCAGGATGAGTTCAAGGCGGCCGTGGGGGCCATCGTGTCCTGCCTCC 879159 Query 13855 CTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGC 13914 | |||||| ||||||| | | || | |||||| |||| || ||| ||||| | Sbjct 879158 CCAACGTGTTCCTGGCCACCAAGATGGAGAGCGTGGTCTACGCGTCGTGGTCCCGCGTCC 879099 Query 13915 AGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGC 13974 |||| ||||| | ||||||| |||||| | ||||| ||| |||||| |||||||| Sbjct 879098 AGGCGGACCTGAACTGCATGAGAGACCTGCTGGACTCCCAGGTCCAGTGGAAGTACCTGC 879039 Query 13975 TCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGA 14034 | ||| ||||||| |||||||| |||| ||||||| |||||| |||| | ||||| Sbjct 879038 TGAACACATGCGGGAGCGACTTCCCCATCAAAACCAACCGGGAGATGGTGCAGACGCTGC 878979 Query 14035 AGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACC 14094 || ||||| | |||| ||| | ||||| ||| || ||||| || | | | Sbjct 878978 AGACCCTGAGGGGCAGCAACAGCATGGAGTCGGAGACCA---CCAACGACTACAAGAAGG 878922 Query 14095 GCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACA 14154 || | || || ||| || || || | ||| ||| |||| | || || Sbjct 878921 GCCGCTGGCAGTACCACCACCGGGTCA-CG--GATCAGGTCGTCCGGACCGACGCGACCA 878865 Query 14155 AGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCC 14214 ||| ||| ||||| | | | |||||| || | || ||||| ||||| | ||| || Sbjct 878864 AGGGCCCCCCGCCCATAAACACCCCCATGTTCTCCGGGAACGCCTACTTCGTGGTGTCCA 878805 Query 14215 GGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCG 14274 ||| ||| ||| || || | | ||||| | |||| |||| || | ||| Sbjct 878804 GGGCGTTTGTGCACCACGCGTTGACGGACGCGGAGGTGCAGGCGCTCCTGGAGTGGGAGA 878745 Query 14275 AGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGC 14334 ||||||| | |||||| ||||||||||||||||||||| ||||||| ||| | || | Sbjct 878744 AGGACACCTTCAGCCCGGACGAGCACCTGTGGGCCACCCTGCAGAGGATGCCCCGGGTCC 878685 Query 14335 CCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGT 14394 | ||| | | ||| ||| |||||||||||| ||||||||| |||| || | Sbjct 878684 CGGGGTCGGTGCCCCCCAACGACAAGTACGACACGTCGGACATGCTGGCCCTGGCGCGCG 878625 Query 14395 TCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCG 14454 | ||||||||| ||||| | |||||| | || | ||||||| ||||| || ||| Sbjct 878624 TGGTCAAGTGGGGCTACTTAGCGGGGGACGTGGAGCAGGGGGCCCCGTACCGACCCTGCA 878565 Query 14455 ACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCT----G 14510 ||| | || || | ||| | | ||| | || ||||| |||||| | Sbjct 878564 CCGGGGACTACAGGAGATCCGTGTGCGTGTACGGAGCAGGGGACGTCCGGTGGCTCCTCG 878505 Query 14511 AAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGACGAGTTCGCCGTG 14570 | | | |||||||| |||||||||||||| |||| || || ||||| | Sbjct 878504 CACAAAG----ACACCTGTTGGCCAACAAGTTCGATCCTGAGATCGATGACGTCGCCATC 878449 Query 14571 CGCTGTCTGGA 14581 | |||||||| Sbjct 878448 AGGTGTCTGGA 878438 >seq9568 Length=122006 Score = 89.7 bits (98), Expect = 7e-13 Identities = 255/382 (67%), Gaps = 20/382 (5%) Strand=Plus/Minus Query 13695 TTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAG---ATGTTCGAGCGCCTC 13751 || ||| | |||||||| | ||| | ||| ||| || | ||| | |||||| || Sbjct 42586 TTCCCCCTGGCCTACTCCCTGGTGGTGCAC---AAGCACGCGCCCATGGTGGAGCGCATC 42530 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 || ||||||||||| ||||| ||| | || ||| | ||| ||| |||||| | Sbjct 42529 CTCCACGCCATCTACGCGCCGCACAACGTGTATTGCATTCACTACGACCAGAAGTCCTCC 42470 Query 13812 GACGAGTTCATCCGG--GGCGTCTCGGCCATC--GCCAGGTGCTTCCCTAACGTGGCCCT 13867 | ||| ||| ||| | | || || ||| | ||| ||| |||||| | | Sbjct 42469 CCGGCCTTC---CGGAAGGC-TATGGGGAATTTGGCCCGCTGCCTCCACAACGTGTTCGT 42414 Query 13868 GGCCCACCGGCTGCACGACGTGGTGTACGGCTC-CTGGAGTCGCGTGCAGGCCGACCTCA 13926 |||| | |||| | |||| ||||| ||| | || | || | |||||||||| Sbjct 42413 GGCCTCCAAGCTGGAGTCTGTGGAGTACG-CTCACATCAGCAGGCTGAACGCCGACCTCA 42355 Query 13927 GCTGCATGTCGGACCTG--GACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTG 13984 |||| | || ||| || || | || |||| |||||||||| | |||||||||| Sbjct 42354 ACTGCCTCTCCGACTTGCTGAGG--TCAGAGGTCAGGTGGAGGTACGTCATCAACCTGTG 42297 Query 13985 CGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGG 14044 ||| |||||| || ||| ||||||| ||| | ||| ||| |||||||| ||| Sbjct 42296 CGGCCAGGACTTTCCCCTCCGGACCAACTACGAGCTGGTGAGGGAGCTGAAGGAGCTGAA 42237 Query 14045 CGGCAAGAACGCCCTGGAGAGC 14066 ||||| ||| ||||||||| Sbjct 42236 CGGCAGCAACATGCTGGAGAGC 42215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658526978932480