Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7053 98.7 8e-16 seq3173 98.7 8e-16 >seq7053 Length=111041 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||| ||| || Sbjct 46967 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 46908 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || |||||||| || || || ||||| || || || ||||||||||| || Sbjct 46907 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 46848 Query 4692 AC 4693 || Sbjct 46847 AC 46846 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||| ||| || Sbjct 51644 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 51703 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || |||||||| || || || ||||| || || || ||||||||||| || Sbjct 51704 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 51763 Query 4692 AC 4693 || Sbjct 51764 AC 51765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||| ||| || Sbjct 60565 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 60624 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || |||||||| || || || ||||| || || || ||||||||||| || Sbjct 60625 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 60684 Query 4692 AC 4693 || Sbjct 60685 AC 60686 >seq3173 Length=1876 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 ||||||||||| ||||| ||||| || || || | |||||||| | |||| ||| || Sbjct 350 TCGTCTCTGCTGATCAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCGCTTCTTC 409 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| || || |||||||| || || || ||||| || || || ||||||||||| || Sbjct 410 AGCCAGAAGATGGCGGCAAAGGAGCCCGAGAAGAAGATTCCCTCCACGGCGGCAAAGGCC 469 Query 4692 AC 4693 || Sbjct 470 AC 471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426915460117409