Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetraodon_20nigroviridis_20[genbank_20GCA_5F000180735.1_202004-05- 14] 25,773 sequences; 342,403,326 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq14557 136 4e-27 seq18908 129 5e-25 >seq14557 Length=1650391 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| ||||||||| ||||| |||||||| |||||||| | || || Sbjct 90844 ACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 90903 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || ||||| | ||| || || | ||||| || ||||||||| | Sbjct 90904 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGG 90963 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | | |||||||| | ||||||||| | || || ||||| Sbjct 90964 ATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGGGTGATGGTTTTG 91023 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || ||||| ||||| ||||||||| Sbjct 91024 CCAGTGAGGGTCTTGACGAAGATCTGCATG 91053 Score = 129 bits (142), Expect = 5e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||| ||||| ||||| |||||||| |||||||| Sbjct 91063 AGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 91122 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 91123 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 91182 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 |||||| ||| || |||| ||| || | |||| || | ||||||||| | || Sbjct 91183 TTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGTTGTCACTGGGCTCCACCTCGAGGGT 91241 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || || ||||| ||||| ||||||||| Sbjct 91242 GATGGTTTTGCCAGTGAGGGTCTTGACGAAGATCTGCATG 91281 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || ||| ||| ||||| ||||| |||||||| |||||||| Sbjct 91291 AGACGCAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGG 91350 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 91351 CCATCTTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 91410 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||||||||| | || Sbjct 91411 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTG 91470 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || || || ||||| || || ||||||||| Sbjct 91471 ATGGTTTTGCCAGTGAGGGTCTTGACAAAGATCTGCATG 91509 >seq18908 Length=594 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 41657 AGATGCAGCGTG-CTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAG 41715 || ||||| ||| | ||| ||||| ||||| |||||||| |||||||| | || || || Sbjct 581 AGGTGCAGGGTGGCACTCTTTCTGCATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAG 522 Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775 ||||||||| || || ||||| | ||| || || | ||||| || ||||||||| ||| Sbjct 521 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGAT 462 Query 41776 TTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACC 41835 || ||||| | | |||||||| | ||||||||| | || || ||||| || Sbjct 461 CTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCAAGAGTGATGGTTTTGCC 402 Query 41836 CGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || ||||||||| Sbjct 401 AGTGAGGGTCTTGACAAAGATCTGCATG 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462155062987600