Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq123333 89.7 5e-13 seq123332 84.2 2e-11 seq123334 82.4 8e-11 >seq123333 Length=523 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||||||||| ||||||||||| || ||||| |||||||||||||| ||||| Sbjct 153 ATGTATGTATCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGG 212 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || || || || |||| ||| || | | || |||||| Sbjct 213 AAACCATAGAAACATCTGGCCTCTGTCACCTGCACTTCC 251 >seq123332 Length=1279 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| || ||||| || || |||| ||||||||| |||| |||| Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 | | ||| || || || ||||| || ||||| ||||| || ||||| || Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 1089 >seq123334 Length=530 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 |||||||| ||||||||||| || ||||| |||||||||||||| ||||| || || || Sbjct 1 TCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAACCATAG 60 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 || |||| ||| || | | || |||||| Sbjct 61 AAACATCTGGCCTCTGTCACCTGCACTTCC 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516684779342160