Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq97926 482 3e-131 seq44434 102 1e-16 seq34237 84.2 3e-11 >seq97926 Length=3727 Score = 482 bits (534), Expect = 3e-131 Identities = 1280/1946 (66%), Gaps = 27/1946 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || |||| | | || ||| || || || | || || || ||||| Sbjct 2058 TTCTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTG 1999 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 1998 ACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1939 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | |||||| || || |||| || || || || || || |||||||| || |||| ||| Sbjct 1938 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAAC 1879 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | ||| || || | |||| | | ||| || || || || | | ||| | ||| || Sbjct 1878 AGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1819 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | ||| | | | || || || || || ||| | || | Sbjct 1818 TCTGTCGG--CGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAGAGC 1761 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || || || ||||| | || | || || || || || || ||||| | | | Sbjct 1760 CTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAGGGAAG 1701 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| |||||||||| | || || || || || |||| ||||| | Sbjct 1700 CGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGG 1641 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | ||| | || || || || || || | |||||| ||||| || ||||| || || | Sbjct 1640 GGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGT 1581 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || || | || ||||| || | || || | || || || || || || | Sbjct 1580 GACGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGT 1521 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 | |||||| | || ||||||||| ||| | |||||| ||| ||||| |||| Sbjct 1520 TCAGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAG-GTCCGC 1462 Query 53685 CTA----TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740 | | || ||||||| | || || || ||||||||||| || || ||||| | Sbjct 1461 TCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCG 1402 Query 53741 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 53800 || | |||| | ||||| ||||| || || || || |||||||| || | ||| Sbjct 1401 TCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTC 1342 Query 53801 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCA 53860 || || || ||||| |||| || || || || || || ||| | || ||||| ||||| Sbjct 1341 TGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCT 1282 Query 53861 ATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTC 53920 ||||||| || ||||| || | ||| | ||||||| | | | ||| | | Sbjct 1281 GTCTGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCTTG--ACCC 1224 Query 53921 TTTTCTCTTTCGTATAGT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 ||| ||| ||| | || || | |||||||| || ||||| | |||| Sbjct 1223 GGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCA 1164 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGTTT 54036 |||||| || | ||||||||||| ||||| ||| || | ||| ||||| || Sbjct 1163 GCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTCTT 1106 Query 54037 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGT 54095 ||| ||||| || || ||||| || || || || || ||||||| ||| || ||||| | Sbjct 1105 CATGAAGAGGTCCGGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCT 1047 Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155 | ||||| || || || || || | |||| | | | |||| | |||||||| |||| || Sbjct 1046 TCCCTGTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGT 987 Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215 | |||| | |||| || | ||||| |||||||| || | ||| | || ||||| | Sbjct 986 ACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGT 927 Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275 | |||||||||| ||| || | | || ||||| || ||||| |||| ||| |||| Sbjct 926 TGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGC 867 Query 54276 TTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 | || | | | || || | | | || || || || || ||| ||||| | Sbjct 866 TCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGA 807 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 ||||| | || | ||| ||||| ||||| || || || || ||| ||||| || | Sbjct 806 GGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCA 747 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | || ||||| |||| || | | | ||||| || || || | || || || |||| Sbjct 746 GGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGT 687 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || ||||| || || || || || ||||| |||||||| ||| || |||| | Sbjct 686 GGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTC 627 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || ||||| || | || | ||| | ||||||||| |||| || | | ||| || Sbjct 626 CGTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGT 567 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 | || |||| || |||||| |||| ||| || || ||||| ||||||| || || | Sbjct 566 TGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAAT 507 Query 54636 CTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGG 54695 ||| ||| | || || | |||||||| || || | | | ||| | | | | Sbjct 506 CTCTGTCGAAGATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTTGAGCG 447 Query 54696 TAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTGACATAGTTAAAT 54751 | | ||| || || || || || | |||| ||| || ||||| ||||| || Sbjct 446 T-CTCCTTGGAGATCATGGGGGAGTGGCGTTT---ATTCAAGGGGTTGACGTAGTTGTAT 391 Query 54752 AAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCT 54811 | ||||| |||||| ||||| || | ||| || || || ||||| || ||||| ||||| Sbjct 390 AGATCCTCCATCACGTCACTGAACACTTTCTTCGTCTCCTTGTGGAGGTTTGAGACGGCA 331 Query 54812 ATTCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 54871 || | || || || |||||||| || || |||| || || ||||| || || || Sbjct 330 ATCCGTGCAGCGAGGATGGCATAGTCGGGGTGTTTAGTTGTGAGCGTGGCGGCGATCTCC 271 Query 54872 GCTGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 54931 |||| || ||||||| || || || || || || | || | || || || |||||| Sbjct 270 GCTGCTAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCTTC 211 Query 54932 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 54991 || | || | ||||| | | || | ||| | || || || | || || Sbjct 210 ATCGTAATCTGGGCCGGATCCACAAAGTCGGAGTTCAGCCCGTAGCAGAGCTTCTGGATG 151 Query 54992 CGAGATGTGATTTTATCAAACATGAC 55017 ||||| ||||||||||| |||||||| Sbjct 150 CGAGAGGTGATTTTATCGAACATGAC 125 >seq44434 Length=8273 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| || || |||||||| || || || ||||| |||| ||||| || | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || ||||||| || || ||||| || | || |||| ||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 || || || || |||||| | || | || ||||| |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||||||||| || || ||||| || || | || || ||||||| || || Sbjct 2775 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTG 2834 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || ||||| || || || | || | ||| | | | ||| ||||||||||| Sbjct 2835 CTCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGG 2894 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 2895 CTCCAGGTA 2903 >seq34237 Length=22483 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 || ||||| | ||||| || ||||||||||| | ||| || ||||| | |||| || Sbjct 12758 TCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCTTTAGCCAGTAGATGGCAGCG 12817 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTC 24285 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||||| Sbjct 12818 AATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAGCCACAAGTC 12866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592734077705760