Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq15002 91.5 2e-13 >seq15002 Length=42408 Score = 91.5 bits (100), Expect = 2e-13 Identities = 178/256 (70%), Gaps = 8/256 (3%) Strand=Plus/Plus Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202 ||||||||| |||||||||||||||||||| | ||| || || |||| || | || Sbjct 17571 GAACTTCTCAAAGTTCCAGGCCACGTCGTTCCTGCAGACCGGGCTCCAGATGATCAACTT 17630 Query 83203 GGGGTCGCTCACGAGCGTGCTCATG-TCGTCGCTAGGCGCCGGCAGGGCCTCTCGT--AG 83259 |||||| ||| | ||| | || || || || || | || || || || | || Sbjct 17631 TGGGTCGTTCAAAAAAGTG-TGTTGCTCATCACTGGGGGATGGGAGA--CTTTCCTTCAG 17687 Query 83260 GAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTT-CTCGAAGAGCATAA 83318 ||| | ||| || ||||| | | ||||| || || ||||| ||| | |||| || Sbjct 17688 GAACGTGAACAGGGGATGGGTATTCTTCCCGTTCACATC-CACTTTCTCCAGGAGCTGAA 17746 Query 83319 AGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCAT 83378 | || ||||| |||||||| ||||||||||| | |||||| || | ||| || | | Sbjct 17747 ACTTTGGCTCAAAGCCGTTTCCAGGACGGACATACTTCAGAGACAAGAGGATTTCTTCGT 17806 Query 83379 TCTGGGCGTTTTCCTG 83394 ||| | ||| ||||| Sbjct 17807 TCTTGCAGTTCTCCTG 17822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607784203502480