Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq85215 159 4e-34 seq123332 114 1e-20 seq123334 96.9 4e-15 seq123333 96.9 4e-15 seq92941 96.9 4e-15 >seq85215 Length=7700 Score = 159 bits (176), Expect = 4e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||||||||| || || || || || ||||| ||||| |||||||| | || ||||| | Sbjct 6650 AAAAATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTTTAGAGGTCGAGCC 6709 Query 40746 CACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 || |||| | | | ||||| |||||| ||| || | || ||||| |||||||| | | Sbjct 6710 CAGTGACACCATTGAAAACG-TCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCTCCTG 6768 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| | | |||| ||| || || |||||||| || | ||||||||| ||||| Sbjct 6769 ACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 6828 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||||| |||| || ||||| ||| |||| Sbjct 6829 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCG 6868 >seq123332 Length=1279 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||||||||| || || ||||| ||||||| || || ||||| Sbjct 1116 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 1057 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| || ||||| ||||| | ||||| |||||||||||||| ||| |||||||||| Sbjct 1056 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 997 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 996 ATCAGCAGAGATGAGG 981 >seq123334 Length=530 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/127 (79%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| ||||| |||||| | ||| |||||||| |||| || | ||| | | Sbjct 339 AGGTGGATCTGTCGAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGATGAGGAGAGGTAC 281 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| || ||| |||| || |||||||||||||||||||||||||||||||| ||| Sbjct 280 TTCATCTCTCATGTGTTGGCTTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 221 Query 116804 GTCGAGC 116810 || |||| Sbjct 220 GT-GAGC 215 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| | || ||||| || || || Sbjct 108 GGTGGAGCGCTTCACCCAGGAAGTGCAGGTGACAGAGGCCAGATGTTTCTATGGTTTCCA 49 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTA 116895 |||||||||||||||| | ||||| || ||||| Sbjct 48 GATCGCCATGGAGAACATCCACTCAGAGATGTA 16 >seq123333 Length=523 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/127 (79%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 ||||||| ||||| |||||| | ||| |||||||| |||| || | ||| | | Sbjct 500 AGGTGGATCTGTCGAAGGACCTGCAGC-ACTGGGAGTCTCTGAAGGATGAGGAGAGGTAC 442 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| || ||| |||| || |||||||||||||||||||||||||||||||| ||| Sbjct 441 TTCATCTCTCATGTGTTGGCTTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 382 Query 116804 GTCGAGC 116810 || |||| Sbjct 381 GT-GAGC 376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| ||||||||| | ||||| | || ||||| || || || Sbjct 269 GGTGGAGCGCTTCACCCAGGAAGTGCAGGTGACAGAGGCCAGATGTTTCTATGGTTTCCA 210 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| ||||||||| || ||| Sbjct 209 GATCGCCATGGAGAACATCCACTCAGAGATGTACAGCCTCCTCATCGATACATAC 155 >seq92941 Length=5299 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| | | |||| ||| ||||| |||||||| || | ||||||||| |||| Sbjct 5294 GACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAC 5235 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||||| | || || ||||| || |||| ||||||| || Sbjct 5234 TACAACATCCAGAAGGAGTCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 5182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514362248785120