Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq42779 105 8e-18 seq85215 102 9e-17 seq108454 100 3e-16 seq50821 96.9 4e-15 seq92567 95.1 1e-14 seq50820 95.1 1e-14 seq41391 95.1 1e-14 seq111413 91.5 2e-13 seq72747 91.5 2e-13 seq108453 84.2 2e-11 >seq42779 Length=8654 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||| Sbjct 2756 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 2815 Query 60123 CTATACTACCGAGGATTG 60140 |||||||| |||||| || Sbjct 2816 CTATACTAACGAGGAGTG 2833 Score = 104 bits (114), Expect = 3e-17 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 60061 ATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 60120 ||| ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 5181 ATTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 5240 Query 60121 CACTATACTACCGAGGATTG 60140 |||||||||| |||||| || Sbjct 5241 CACTATACTAACGAGGAGTG 5260 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1115 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1174 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 1175 TACTAACGAGGAATG 1189 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4624 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 4625 TACTAACGAGGACTG 4639 >seq85215 Length=7700 Score = 102 bits (112), Expect = 9e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||||| ||| | ||| | ||| |||||| || || ||||| || | Sbjct 6881 TCCTCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 6822 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || |||||||| || ||||| || | | ||||||||| | || Sbjct 6821 GAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGG 6762 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || || ||| ||| ||| |||| | | | ||||| || | || || Sbjct 6761 GATGCCTTCTTTATCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGAC 6702 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| |||||||| ||||||||||| Sbjct 6701 CTCTAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATTTTTAC 6648 >seq108454 Length=5532 Score = 100 bits (110), Expect = 3e-16 Identities = 76/89 (85%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 60056 GAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 ||||| || |||||| || | ||||||||||||| ||||| |||||||||||||||| | Sbjct 1563 GAAAAGTTAATTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 1622 Query 60114 TACTCACCACTATACTACCGAGGATTGAA 60142 |||| ||||||||||| |||||| |||| Sbjct 1623 TACTGTCCACTATACTAACGAGGACTGAA 1651 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 624 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 683 Query 60125 ATACTACCGAGGATTGAA 60142 |||||| |||||| |||| Sbjct 684 ATACTAACGAGGACTGAA 701 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 4410 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 4351 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4350 ATACTAACGAGGA 4338 >seq50821 Length=5110 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 2098 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 2039 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 2038 ATACTAACGAGGATTG 2023 >seq92567 Length=5447 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1988 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1929 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1928 TACTAACGAGGA 1917 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3157 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3098 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 3097 TACTAACGAGGA 3086 >seq50820 Length=2672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 60057 AAAAATTTT--CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 |||| |||| |||| || | ||||||||||||| ||||| |||||||||||||||| || Sbjct 566 AAAAGTTTTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGAT 625 Query 60115 ACTCACCACTATACTACCGAGGATTG 60140 ||| ||||||||||| |||||| || Sbjct 626 ACTGTCCACTATACTAACGAGGACTG 651 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 1486 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 1427 Query 60126 TACTACCGAGGATTG 60140 ||||| ||||||||| Sbjct 1426 TACTAACGAGGATTG 1412 >seq41391 Length=5293 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 2351 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 2410 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 2411 CTATACTAACGAGGA 2425 >seq111413 Length=2573 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 60051 TTTATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 || || || |||| | |||| || | ||||||||||||| ||||| ||||||||||||| Sbjct 2137 TTGATAAAGAATTGATCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGC 2078 Query 60109 GGACATACTCACCACTATACTACCGAGGA 60137 ||| ||||| ||||||||||| |||||| Sbjct 2077 GGAGATACTGTCCACTATACTAACGAGGA 2049 >seq72747 Length=21263 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 60051 TTTATGAAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGC 60108 || || || |||| | |||| || | ||||||||||||| ||||| ||||||||||||| Sbjct 21256 TTGATAAAGAATTGATCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGC 21197 Query 60109 GGACATACTCACCACTATACTACCGAGGA 60137 ||| ||||| ||||||||||| |||||| Sbjct 21196 GGAGATACTGTCCACTATACTAACGAGGA 21168 >seq108453 Length=606 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||||||||| || ||| |||||||||||||||| ||||| ||||| Sbjct 102 TCTCCCCGTCGGGGAATCGAACCTTG-TCTTCCGCGTGACAGGCGGAGATACTGTCCACT 160 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 161 ATACTAACGAGGA 173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570866510081360