Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1639 297 1e-75 seq30036 100 2e-16 >seq1639 Length=7166 Score = 297 bits (328), Expect = 1e-75 Identities = 613/903 (68%), Gaps = 18/903 (2%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||| | || ||| |||||| |||||||||||||| |||||| ||||||||||| Sbjct 1707 CCTCTCAGTGAGGAGGAGAGAGACTTTCCCATTGCCTACTCCATGGTGATCCATGAGAAG 1648 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | ||||| || || || ||||| || || | ||||||||||| |||||||| Sbjct 1647 ATTGAGATGTTTGAGCGCCTTCTACGAGCTGTTTACACTCCTCAGAACATCTACTGTGTG 1588 Query 107808 CACGTGGATGTGAAGTCC-CCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTG 107866 || ||||| ||| ||| | | || ||||| | |||| || |||| ||| ||||||| Sbjct 1587 CATGTGGACCAGAAATCCACTAAGGAATTTCAGA-AGGCTGTAGAGGCAATTGTTTCCTG 1529 Query 107867 CTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAG 107926 ||| || ||||| || ||||||||| || | ||||| || ||||| ||||| || Sbjct 1528 CTTACCTAATGTGTTTGTGGCCAGTAGATTAGAAAGAGTGGTATACGCCTCATGGTCAAG 1469 Query 107927 AGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCA---GTGCCATGGAA 107983 |||||| || || || ||||| ||| |||| || | | | ||| || | |||| Sbjct 1468 AGTGCAGGCGGATCTCAACTGCATGAAAGATCTGTT---GGGGTCACACGTCCAGTGGAG 1412 Query 107984 GTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCT 108043 |||| | || || || || ||||| ||||||||||| || |||||| |||||||| | Sbjct 1411 GTACCTGCTCAACACCTGTGGGACTGACTTCCCCATCAAAACCAATAGGGAGATGGTTCA 1352 Query 108044 GGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaa 108103 ||| || ||| | || || | ||||| ||||| ||||||| | ||| | ||| Sbjct 1351 GGCTCTGAAGTCCCTCAACGGAAGAAACAGCATGGAATCTGAGGCCACCAATGACTACAA 1292 Query 108104 aaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGAT 108163 ||||| || ||| || | || | || || || | | || || | || Sbjct 1291 GAAAAACCGTTGGCGTTATCATTACAATGTCACCAACCAAGTTGTCCAGACGAATGTGAG 1232 Query 108164 GAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTC 108223 ||| ||| || || || ||||||||| |||| |||||||| ||||||| | | Sbjct 1231 GAAAAGCCCCCCTCCCATTACGAGCCCCATGTTCTCAGGAAATGCCTACTTTGTGGTCAC 1172 Query 108224 TCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGT 108283 | |||||||| ||||||| | | || | || | | | | || |||| Sbjct 1171 AAGGGCCTTTGTGAAACATGTGCTGCAGGACAGAGAGGTTCAGAAATTACTGGAGTGGGA 1112 Query 108284 CAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TG--CTCCGT 108339 || ||||| || ||||| || || ||| | |||||||| || ||| | || ||||| Sbjct 1111 GAAGGACACATACAGCCCTGATGAGCACTTGTGGGCCACTCTGCAGAGGATGCCCTCCG- 1053 Query 108340 GGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCG 108399 | ||||| || | ||| | |||||| ||| ||||||||| ||||| | Sbjct 1052 ---TTCCTGGATCCATGCCTGCTAATGTCAAGTACGACACATCAGACATGCAAGCCATTG 996 Query 108400 CCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCAC 108459 | | | || |||||| || | |||||| | || || || || || | | Sbjct 995 CTCGTGTGGTGAAGTGGAGCTATTTAGCAGGAGATATGAGAGACGGAGCCCCGTACGATC 936 Query 108460 CCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGA 108519 | ||| |||| ||| || | || || | || | ||||| || |||||||| | ||| Sbjct 935 CATGCACTGGGATCTATAGAAGAGCAGTTTGTGTGTACGGAGCTGGGGACCTCAAGTGGC 876 Query 108520 TTCTCCAGA-ACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTC 108578 | || ||| | || |||||||| ||||| |||||||| || ||| ||||| | || | Sbjct 875 TCCT-GAGACAACACCACCTCTTTGCAAATAAGTTTGATCCAGAGGTTGATGACATCGCC 817 Query 108579 CTG 108581 ||| Sbjct 816 CTG 814 >seq30036 Length=2285 Score = 100 bits (110), Expect = 2e-16 Identities = 144/202 (71%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 107754 AACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTG 107813 || ||||| || |||||||||||| | || || || || || || || |||||||| || Sbjct 124 AATTTTGAGCGTCTGCTGCGAGCCATCTACGCACCCCAAAATATTTATTGTGTCCATGTT 183 Query 107814 GATGTGAAGTCCCCAGAGACTT---TCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTC 107870 || || || ||| | | ||| || |||||||||| | | | || ||| Sbjct 184 GACAAAAAATCT---GAGGCCTCAGTCATCTCTGCCATCAAGGCCATCACTGCTTGTTTC 240 Query 107871 CCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTG 107930 || ||||||||||| ||||| ||| || ||||||||||| ||||| | |||| Sbjct 241 CCAAATGTCTTCATAGCCAGCAAGACTGTGAGTGTGGTTTATGCTGCCTGGCCACGAGTC 300 Query 107931 CAAGCTGACCTGAACTGTATGG 107952 || |||||||| |||||||||| Sbjct 301 CAGGCTGACCTCAACTGTATGG 322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 201/297 (68%), Gaps = 15/297 (5%) Strand=Plus/Plus Query 108269 ACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCA 108328 |||| |||| |||| |||||||||||| || || || || |||||||| ||| |||| Sbjct 770 ACTGATTGAGTGGGCCAAAGACACCTACAGTCCTGATGAGTTTCTCTGGGCAACCATTCA 829 Query 108329 GCG--TGCTCCGTGGATGCCTGGCTCTGTTCCTAGCC--ACCCCAAGTATCACATCTCAG 108384 || ||| ||| | |||||||| | | ||| || ||| ||| |||| ||| Sbjct 830 ACGAATGCCTGGTG--TTCCTGGCTC--AACGTGGCCCAACAGCAAATATGACATGACAG 885 Query 108385 ACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGG-----AGATGTCAG 108439 |||| | ||| || || |||| || |||||||||| |||||||| || ||| Sbjct 886 ACATCAATGCAATTGCACGGCTGGTGAAGTGGCAGTGGCACGAGGGGTCACAGGATTCA- 944 Query 108440 CATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 ||| ||| || || || || | |||| || | || || | || || Sbjct 945 -CTGGACGCGGTGTACCCAGAGTGTCAAGGCAACCATGTCCGGTCAATATGTGTGTATGG 1003 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||| |||||| | ||||| || || | ||||||||||| || || |||||||| Sbjct 1004 TGCCGGAGACCTGCAGTGGATGCTTAAGCAGCATCACCTCTTTGCCAATAAGTTTGA 1060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347704014881388