Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq97926 123 5e-23 >seq97926 Length=3727 Score = 123 bits (136), Expect = 5e-23 Identities = 639/1010 (63%), Gaps = 52/1010 (5%) Strand=Plus/Plus Query 248437 GACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGCGCGCATCAAGAAGCTCTGT 248496 || || ||| |||| ||| | ||||| |||||| | | |||||| |||||||||| Sbjct 107 GATGGACGCCAAGAGCGCGTCATGTTCGATAAAATCACCTCTCGCATCCAGAAGCTCTGC 166 Query 248497 TATGGTCTGGAACCCAACTTCGTCGATCATGTGGCC---ATCGCCCAGAAAGTTATTTCG 248553 || || ||| | || |||| || |||| |||| || | ||| || ||| | Sbjct 167 TACGGGCTGAACTCCGACTTTGTGGATCC---GGCCCAGATTACGATGAAGGTGATTCAG 223 Query 248554 GGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTTAGCTGCGGAGACGGCGGCG 248613 || | |||| ||| || || || || |||||||| |||| ||||||| || || Sbjct 224 GGTTTGTACAGCGGCGTCACCACCGTGGAGCTGGACACGCTAGCAGCGGAGATCGCCGCC 283 Query 248614 TACATGGCGATTGCACACCCCGACTACTCGCTGCTGGCCGGGAGGATCGCCGTCTCAAGG 248673 | | | | |||||||||||| | | || || | |||| |||||||||| Sbjct 284 ACGCTCACAACTAAACACCCCGACTATGCCATCCTCGCTGCACGGATTGCCGTCTCAAAC 343 Query 248674 CTTCACAAAGAAACGAA-AGAGTCGTTCGTCGAAACCATGGCTGACCTACATGCCTATGG 248732 || ||||| || ||||| | ||| |||| || |||| || ||| | ||| | Sbjct 344 CTCCACAAGGAGACGAAGAAAGT-GTTCAGTGACGTGATGGAGGATCTATACAACTACGT 402 Query 248733 GA------TGG-----------TCGCCGATGACGTCCA----------CACCGTCATTCA 248765 | || || || |||| |||| || | || ||| Sbjct 403 CAACCCCTTGAATAAACGCCACTCCCCCATGATCTCCAAGGAGACGCTCAACATCGTTCT 462 Query 248766 GGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTT 248825 || ||| ||| ||| || ||| || || || || |||||| ||| | || Sbjct 463 CGAGAACAAAGACCGCCTCAACTCCGCCATCATCTTCGACAGAGATTTCTCCTACAACTT 522 Query 248826 CTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGA 248885 ||||| ||||| || |||||| || || || | || || | ||||| | | || Sbjct 523 CTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAAGTGGCCGA 582 Query 248886 ACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAG 248945 ||| ||||||||| | ||| ||||| | ||||| || ||| ||| | ||| || Sbjct 583 GCGACCGCAGCACATGCTCATGAGAGTGTCGGTCGGAATCCAC--GGAAAAAATATTGAT 640 Query 248946 CGTGC--TCGAGACGTACACCGGAATG--AGTGAACGCTGGATGACACATGCCACACCGA 249001 || ||||||| |||| | || || ||| ||| | || || ||| | || | Sbjct 641 GAAGCCATCGAGACCTACAACCTGCTGTCAGAGAAG--TGGTTCACCCACGCCTCCCCCA 698 Query 249002 CGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGC 249061 | ||||||||||| || ||| || ||||||| | ||||| || || |||||| Sbjct 699 CTCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGA 758 Query 249062 AAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAAT 249121 | |||||| |||| ||||||||||||||||| || ||| || || || |||| Sbjct 759 AGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAAT 818 Query 249122 TCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAG 249181 ||||| ||||| || | | ||| | |||| || | | || |||||| | Sbjct 819 CAGCGGGAGGAATTGGCGTGGCTGTCAGCTGCATCAGATCAACCGGGAGCTACATCGCCG 878 Query 249182 GTACAAATGGGGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCAC-CGCC 249240 | || || || | | || | || ||| | || || ||| | || || | Sbjct 879 GCACCAACGGCAACTCCAACGGCCTAGTCCCCATGCT--GAGAGTTTACAACAACACGGC 936 Query 249241 AGGTT-CATCAACCAGGCCGGGCGCCGAAAG----GGGTCGTTCGCCATGTATTTGGAAG 249295 | ||| | || |||||| ||| | | || || | ||||||||||| |||| Sbjct 937 ACGTTACGTCGACCAGG-GAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGC 995 Query 249296 TGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCA 249355 ||||||| ||| | || |||||| |||| |||| || |||| || || ||| Sbjct 996 CGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAAGAAAAACACAGGGAAGGAGGAGC 1055 Query 249356 TGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATG 249405 ||||| | ||||| ||||||||||||||| || | ||| | |||||| Sbjct 1056 AAAGAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCGGACCTCTTCATG 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071935781970816