Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq97926 439 2e-118 seq44434 129 5e-25 >seq97926 Length=3727 Score = 439 bits (486), Expect = 2e-118 Identities = 1014/1520 (67%), Gaps = 33/1520 (2%) Strand=Plus/Minus Query 22430 GTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGT 22489 ||||| ||||||| ||| ||| | || || | || ||||| ||||| | ||| | ||| Sbjct 2025 GTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGG 1966 Query 22490 TGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTC 22549 ||| |||||| ||| | | |||| ||| || ||||| ||||| ||||| ||||| Sbjct 1965 GTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTG 1906 Query 22550 GAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTA 22609 || || ||||||||||| |||| || || ||| |||| |||||| || | || || Sbjct 1905 GACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTC 1846 Query 22610 CTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTAT 22669 ||| |||| | |||||||||||| || | ||||||| || |||||||| || || Sbjct 1845 TCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGGCGTC---TTCTCCCACATGTCATAC 1789 Query 22670 TGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCG 22729 || | | ||| || | || ||||| |||||| ||||| | || | ||||| Sbjct 1788 TGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGC-TCGCG 1730 Query 22730 G-CAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTT 22788 | | || |||||||| ||||||| | |||| || || ||||||||||| | |||| Sbjct 1729 GGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTT 1670 Query 22789 CAATTCGGCGGCGGC--GACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCC 22846 | | || | | | | |||||| | || |||||||| | ||| || |||||| Sbjct 1669 GAG--CAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCC 1612 Query 22847 ATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGC 22906 | || || || || || ||||| || | || | || ||| | || |||||| Sbjct 1611 AGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGC 1552 Query 22907 AAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATT---TTCGTT 22963 | || || | || || || | |||||| |||| | ||| ||| || || Sbjct 1551 ACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTT---CACGATTACTTTGGTC 1495 Query 22964 ATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATT--GTACAACAAACTTGTTGACGG 23021 | | |||||| ||| | ||| | | || || |||||| | Sbjct 1494 ACGTAGGCCAGTTTTTTAAAGTC--AAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAG 1437 Query 23022 CGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGG 23081 |||| || || ||||| || || ||||||||||| | ||||| || || || || | Sbjct 1436 CGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTG 1377 Query 23082 TACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACG 23141 | || || ||||| || || || ||||||| ||| ||||||||| || | ||||| | Sbjct 1376 TGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGG 1317 Query 23142 AATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCC 23201 || ||||| ||||||||||| || || || || ||| ||||| || || || ||| Sbjct 1316 CGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCC 1257 Query 23202 ACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACA 23261 ||| |||||| | || ||| | || ||| || | ||| || || ||| | Sbjct 1256 ACAGTTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGA 1197 Query 23262 ACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGA 23321 ||| ||||| || | || | || || |||| || || | | |||||||||| | Sbjct 1196 GCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCA 1137 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 || ||| | || |||| || | |||| || || ||||| ||||| || ||| Sbjct 1136 GAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGT 1077 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || || | ||| | |||||| || || ||||| || |||| ||||| || | Sbjct 1076 AGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACT 1017 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | ||||| || ||||||||||| ||||| | ||| || || || |||||||| |||| Sbjct 1016 CAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGC 957 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| ||||||||||| |||||||||||||| ||||| ||||| || || || |||| Sbjct 956 CTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGT 897 Query 23562 TGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 |||| |||| ||| || | ||| || ||| || | | | || Sbjct 896 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCGGTTGATCTGATGCAGCTGACAG 840 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || || ||||| | ||||| || || | ||||| || ||||| ||||| || | Sbjct 839 CCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAA 780 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| ||||||||||| || || | |||| || ||| || |||| || | || Sbjct 779 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGT 720 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCA-TTC---GACATT 23794 || | || ||| || || ||| |||||| || || ||| ||| |||| Sbjct 719 TGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAA----CCACTTCTCTGACAGC 664 Query 23795 AGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGC 23854 || ||||| || |||||||| ||||||| | | |||||| || |||| | || | | Sbjct 663 AGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTC 604 Query 23855 ATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGT 23914 || | ||||| || |||| |||| || |||||| || || ||||| || || || Sbjct 603 ATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGC 544 Query 23915 TGCATCGTTTTAAATCCAAA 23934 | || || || || ||||| Sbjct 543 TCCAGAGTCTTGAAGCCAAA 524 >seq44434 Length=8273 Score = 129 bits (142), Expect = 5e-25 Identities = 154/207 (74%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| ||||||||||| || || || ||||||||||| | || || || Sbjct 2266 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGT 2325 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| |||| ||||| | ||||||||||||||||| || || Sbjct 2326 GCCCAGATTCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2385 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG 23226 ||| || || ||| |||||||||| || ||||| |||||| | ||| | Sbjct 2386 GCCGGTTTCTGTCTGTGACTCGATGACGGCGTACCACAGCTGCTGAGCCT--TCACCACA 2443 Query 23227 CACGTA--CCTGCCTTCTTCCTCGTAC 23251 | | || ||||||||| | ||| ||| Sbjct 2444 CGCTTAGCCCTGCCTTCCTTCTCATAC 2470 Score = 129 bits (142), Expect = 5e-25 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| || ||| ||||||| || | ||| | Sbjct 2771 TTTCCACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCC 2830 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| || ||||| || ||||| ||||| ||||| ||||| || | ||||| Sbjct 2831 TCTGCTCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCC 2890 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 2891 ACGGCTCCAGGTACACAGCGAAGGCCCCAGGTCTCT 2926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445024967891040