Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq97926 497 1e-135 seq123332 96.9 4e-15 seq44434 93.3 5e-14 seq34237 93.3 5e-14 seq123333 82.4 1e-10 >seq97926 Length=3727 Score = 497 bits (550), Expect = 1e-135 Identities = 1283/1948 (66%), Gaps = 31/1948 (2%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | | || ||| || || || | || || || || || Sbjct 2058 TTCTTCATCTCCTCGCTCCACAGTCCTCGCTCCGTCAAGTCTTTGAGCAGGTGAGGATTG 1999 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | ||||| ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 1998 ACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 1939 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || |||||||| || |||| ||| Sbjct 1938 ATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATCAAC 1879 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | ||| || || | |||| | | ||| || || || || | | ||| | ||| || Sbjct 1878 AGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 1819 Query 62565 TCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTA 62617 || | ||| | | ||| ||| || || || || || ||| | Sbjct 1818 TCTGTCGGCGTCTTCTCCCACATGTC-------ATACTGGAGGATGCCCTTGCTGACAGG 1766 Query 62618 CGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAA 62677 || ||| || || || || | || | || || || | || || ||||| | Sbjct 1765 AGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAG 1706 Query 62678 TGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATC 62737 | | |||| || ||||| || ||||||| | || || || || || ||||| || Sbjct 1705 GGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTC 1646 Query 62738 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62797 ||| || ||| | || || || || ||||| | |||||| ||||| || ||||| || Sbjct 1645 AAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGG 1586 Query 62798 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| || || | || ||||| || | || || | || || || || || Sbjct 1585 CCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGAT 1526 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-- 62915 || || || ||| | || ||||||||| ||| | |||||| ||| ||||| Sbjct 1525 CTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAAAGGT 1466 Query 62916 -CGCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 ||| || | || ||||||| | || | || ||||||||||| || || ||||| Sbjct 1465 CCGCTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTC 1406 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 | || | |||| | ||||| ||||| || || || || ||||| || || | Sbjct 1405 GTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAG 1346 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 ||| || || || ||||| |||| || || || || || || ||| | || ||||| || Sbjct 1345 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGT 1286 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTA 63154 ||| |||| || || ||||| || | ||| | ||||||| | | | ||| Sbjct 1285 TTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCTTGAC 1226 Query 63155 TCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63214 | | || | || ||| || || | || ||||| || ||||| | || Sbjct 1225 CCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATC 1166 Query 63215 CAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTT--CACTCGT 63272 || | |||| || | ||||||||||| ||||| ||| || | ||| ||||| Sbjct 1165 CAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGT--TGCTTTCCACTCTC 1108 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTC 63331 ||||| ||||| || || ||||| || || || || || ||||| | ||| || ||||| Sbjct 1107 TTCATGAAGAGGTCCGGGATCCACAG-GCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTC 1049 Query 63332 GTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAA 63391 || ||||| || || || || || | |||| | | | |||| | |||||||| |||| Sbjct 1048 CTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAG 989 Query 63392 GTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTT 63451 ||| ||||| | |||| || | ||||| |||||||| || | ||| | || ||||| Sbjct 988 GTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTT 929 Query 63452 ATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATA 63511 || |||||||||| ||| || | | ||||| || | || ||||| |||| ||| || Sbjct 928 GTTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTA 869 Query 63512 GCCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63571 || || | | | || || | | | || ||||| || || ||| ||||| Sbjct 868 GCTCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGAT 809 Query 63572 TAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAG 63631 | ||||| | || | ||||||||| |||||||| ||||| || || ||||| || Sbjct 808 GAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAG 749 Query 63632 TAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 63691 || || ||||| |||| || | | | ||||| || || || | || || || || Sbjct 748 CAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGC 689 Query 63692 GTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCA 63751 ||| || ||||| || || || || || ||||| ||||| || ||| || |||| Sbjct 688 GTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTT 629 Query 63752 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTT 63811 | || ||||| || | || | ||| | ||||||||| |||| || | | |||| Sbjct 628 TCCGTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCC 569 Query 63812 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63871 ||| || ||||||| |||||| |||| ||| || || ||||| ||||||| || || Sbjct 568 GTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAA 509 Query 63872 GTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT 63931 |||| ||| | || || | || ||||| || || | | | ||| || | | Sbjct 508 ATCTCTGTCGAAGATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTTGAG 449 Query 63932 GGTAATACTT-GAAATAATCGGAGAAT---GTTTCCCATTTTTAGGATTAACATAGTTGA 63987 || | ||| || || || || || | |||| ||| || || || |||||| Sbjct 448 CGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT---ATTCAAGGGGTTGACGTAGTTGT 393 Query 63988 ATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGG 64047 ||| |||||||||||| ||||| || | ||| || || |||||||| || ||||| | || Sbjct 392 ATAGATCCTCCATCACGTCACTGAACACTTTCTTCGTCTCCTTGTGGAGGTTTGAGACGG 333 Query 64048 CTATTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTT 64107 | || | || || || |||||||| || || |||| || || ||||| || || | Sbjct 332 CAATCCGTGCAGCGAGGATGGCATAGTCGGGGTGTTTAGTTGTGAGCGTGGCGGCGATCT 273 Query 64108 CGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCT 64167 | ||||| || ||||||| || || || || || || | || | || ||||| |||| Sbjct 272 CCGCTGCTAGCGTGTCCAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGAATCACCT 213 Query 64168 TCATAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAA 64227 |||| | || | ||||| | | || | ||| | || ||||| | || | Sbjct 212 TCATCGTAATCTGGGCCGGATCCACAAAGTCGGAGTTCAGCCCGTAGCAGAGCTTCTGGA 153 Query 64228 TACGAGACGTGATTTTATCAAACATGAC 64255 | ||||| ||||||||||| |||||||| Sbjct 152 TGCGAGAGGTGATTTTATCGAACATGAC 125 >seq123332 Length=1279 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || ||||| |||| Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 33724 C 33724 | Sbjct 1101 C 1101 >seq44434 Length=8273 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | ||| || || || ||||| || || || | ||| |||| ||||| || | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | ||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 >seq34237 Length=22483 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33636 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAA 33695 ||||| || ||||||||||| | ||| || ||||| | |||| ||||||||| || || Sbjct 12770 GTGAGGCCAGGCATTAGGCCTCTCTTCTTTAGCCAGTAGATGGCAGCGAATGAGCCAGAG 12829 Query 33696 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCC 33739 |||||||| ||||| ||||| ||||| || | ||||| ||| || Sbjct 12830 AAGAAGATGCCTTCCACTGCTGCAAAAGCCACAAGTCGCTCCCC 12873 >seq123333 Length=523 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || |||||||| | || || ||||| || || || ||||| || ||||| ||||| || Sbjct 156 TATGTATCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 215 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||||||||| ||||| || | ||||||||| Sbjct 216 CCATAGAAACATCTGGCCTCTGTCACCTGCACTTC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628770040131360