Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq97926 499 4e-136 seq44434 102 1e-16 seq34237 87.8 2e-12 >seq97926 Length=3727 Score = 499 bits (552), Expect = 4e-136 Identities = 1301/1976 (66%), Gaps = 25/1976 (1%) Strand=Plus/Minus Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146 |||||||||||| | || || | | ||||| ||||| || |||| | | || Sbjct 2089 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCG 2030 Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206 ||| || || || | || || || ||||| || | || || ||||| || | ||||| Sbjct 2029 CTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCT 1970 Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266 || ||||| || || ||||| || | || | |||||| || || |||| || || || Sbjct 1969 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 1910 Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326 || || || |||||||| || |||| ||| | ||| || || | |||| | | ||| Sbjct 1909 GGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGAT 1850 Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386 || || || || | | ||| | ||| || || | ||| | | Sbjct 1849 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGG--CGTCTTCTCCCACATGTCA 1792 Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444 | || || || || || ||| | || ||| || || ||||| | || | || Sbjct 1791 TACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCG 1732 Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504 || || || || || ||||| | | | |||| || ||||| |||||||||| | Sbjct 1731 CGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATG 1672 Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || || || || || |||| ||||| || ||| | || || || || || || Sbjct 1671 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCC 1612 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 | |||||| ||||| || ||||| || || || | ||| || || | || ||||| || Sbjct 1611 AGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGC 1552 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 | || || | || || || || || || || || ||| | || ||||||||| ||| Sbjct 1551 ACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACG 1492 Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741 | |||||| ||| ||||| |||||| | || ||||||| | || | Sbjct 1491 TAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 1432 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || ||||||||||| || || ||||| | || | |||| | ||||| ||||| Sbjct 1431 GACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAG 1372 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 || || || || |||||||| || | ||| || || || ||||| |||| || || || Sbjct 1371 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1312 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 || || || ||| | || ||||| ||||| |||| || || ||||| || | ||| | Sbjct 1311 TTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGT 1252 Query 65922 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATC 65979 ||||||| | | | ||| | | ||| ||| ||| | || || | Sbjct 1251 TGCTGAGCCTTCACCACACGCTTGA--CCCGGCCCTCCTTCTCATATTTGGTGTAGAGCG 1194 Query 65980 GTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACG 66039 || ||||| || ||||| | |||| |||||| || | ||||||||||| | Sbjct 1193 CCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAG 1134 Query 66040 ACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 |||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || | Sbjct 1133 ACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGT 1077 Query 66098 A-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 66156 | || | ||||||| ||| || ||||| || ||||| || || || || || | |||| Sbjct 1076 AGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACT 1017 Query 66157 CCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 66216 | | | |||| | |||||||| |||| ||| ||||| | |||| || | ||||| | Sbjct 1016 CAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGC 957 Query 66217 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 66276 ||||||| || | ||| | || ||||| || |||||||||| ||| || | | || | Sbjct 956 CTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGT 897 Query 66277 TGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATA 66336 |||| | || ||||| |||| ||| ||||| || ||| | || || | | | Sbjct 896 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCA 837 Query 66337 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 66396 || ||||| || || ||| ||||| | ||||| | || | ||| ||||| |||| Sbjct 836 CGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGC 777 Query 66397 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 66456 | || || || || ||| ||||| || || || ||||| |||| || | | | | Sbjct 776 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGG 717 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 66516 |||| || || || | || || || ||||| || ||||| || || || || || |||| Sbjct 716 TTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 657 Query 66517 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 66576 | ||||| || ||| || |||| | || ||||| || | || | ||| | || Sbjct 656 AGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCA 597 Query 66577 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 66636 ||||||| |||| || | | ||| ||| || ||||||| |||||| |||| || Sbjct 596 TGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAG 537 Query 66637 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 66696 | || || ||||| ||||||| || || |||| ||| | || || | |||||||| Sbjct 536 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCGGAGTTGAGGC 477 Query 66697 TATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---GT 66752 || || | | | ||| | | | || | ||| || || || || || | || Sbjct 476 GGTCTTTGTTCTCGAGAACGATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGT 418 Query 66753 TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 66812 || ||| || ||||| |||||| ||| |||||||||||| ||||| || | ||| Sbjct 417 TT---ATTCAAGGGGTTGACGTAGTTGTATAGATCCTCCATCACGTCACTGAACACTTTC 361 Query 66813 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGA 66872 || || || ||||| || ||||| ||||| || | || || | |||||||| || || Sbjct 360 TTCGTCTCCTTGTGGAGGTTTGAGACGGCAATCCGTGCAGCGAGGATGGCATAGTCGGGG 301 Query 66873 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTT 66932 |||| || || ||||| || || || ||||| || ||||||| || || || || Sbjct 300 TGTTTAGTTGTGAGCGTGGCGGCGATCTCCGCTGCTAGCGTGTCCAGCTCCACGGTGGTG 241 Query 66933 ACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCA 66992 || || | || | || || || |||||||| | || | ||||| | | || Sbjct 240 ACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCG 181 Query 66993 GTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 67048 | ||| | || || || | || || ||||| ||||||||||| |||||||| Sbjct 180 GAGTTCAGCCCGTAGCAGAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 125 >seq44434 Length=8273 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| || || |||||||| || || || ||||| |||| ||||| | | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 || || || || |||||| | || | || ||||| |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 >seq34237 Length=22483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || ||||| | ||||| || ||||||||||| | ||| || ||||| | |||| || Sbjct 12758 TCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCTTTAGCCAGTAGATGGCAGCG 12817 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||||| ||| || Sbjct 12818 AATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAGCCACAAGTCGCTCCCC 12873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657078077636080