Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq97926 513 2e-140 seq123332 102 1e-16 seq34237 102 1e-16 seq44434 96.9 5e-15 >seq97926 Length=3727 Score = 513 bits (568), Expect = 2e-140 Identities = 1309/1979 (66%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 |||||||||||| | || || | | ||||| ||||| || |||| | | || Sbjct 2089 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCG 2030 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || || || | || || || ||||| || | || || ||||| || | ||||| Sbjct 2029 CTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCT 1970 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 1969 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 1910 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || || || ||||| || |||| ||| | ||| || || | |||| | ||| Sbjct 1909 GGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGAT 1850 Query 79206 TTTATCTTTTAG-AGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || || || |||| | ||||| || || | ||| | | | | ||| | ||| Sbjct 1849 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCTGTCGGCGTCTTC-TCCCACATGTCA 1792 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || | || ||| ||| || || || | || | || Sbjct 1791 TACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCG 1732 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 ||| | || || || ||||| | | |||| || ||||| ||||| |||| | Sbjct 1731 CGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATG 1672 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 ||||| || || || |||| ||||| || ||| | || || || || || || Sbjct 1671 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCC 1612 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | |||||| ||||| || ||||| || || || | ||| || || | || ||||| || Sbjct 1611 AGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGC 1552 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | || || | || || || || || || || || || | || ||||||||| ||| Sbjct 1551 ACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACG 1492 Query 79564 TCCTTTAGTTTGAGAAAATCAAAT---CGTCCATCTATTACAAACATGTTCAACGCGACA 79620 | ||||| ||| ||||| || || | || ||||||| | |||| Sbjct 1491 TAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 1432 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||||||||| || || ||||| | || | |||| | || || |||||| Sbjct 1431 GACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAG 1372 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| || || || ||||| || | ||| || || || ||||| |||| || || || Sbjct 1371 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1312 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | Sbjct 1311 TTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGT 1252 Query 79801 ACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT 79860 ||||||| | | | |||| | || | || |||| || || | Sbjct 1251 TGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCC 1192 Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 || ||||| || ||||| || || | |||||| |||| |||||||||| ||| Sbjct 1191 TCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGAC 1132 Query 79921 CACTCTCCATCATCCTTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 79977 || ||| | | |||| |||| ||||| ||||| || || ||||| || || || Sbjct 1131 CAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGTAG 1075 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 || || ||||||| ||| |||||||| || ||||| || || || || || | |||| | Sbjct 1074 AAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTCA 1015 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | | |||| | |||||||| |||| ||| ||||| | |||| |||| ||||| ||| Sbjct 1014 AACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCT 955 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 ||||| || | ||| | || ||||| || |||||||||| ||| || | | || ||| Sbjct 954 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTG 895 Query 80158 GATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 80217 || | || ||||| |||| ||| ||||| || | | | || || | | | Sbjct 894 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACG 835 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||||| Sbjct 834 CCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCT 775 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 80337 || ||||| || || ||||| || || || ||||| |||| || | | | ||| Sbjct 774 TCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTT 715 Query 80338 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 80397 || || || || | || || || ||||| || ||||| || || ||||| || ||||| Sbjct 714 CCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAG 655 Query 80398 GTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATG 80457 ||||| || ||| || |||| | || ||||| |||| || | ||| | |||| Sbjct 654 GTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATG 595 Query 80458 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTT 80517 ||||| |||| || | | ||| || || ||||||| ||| || |||| ||| Sbjct 594 TGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTC 535 Query 80518 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 80577 || || ||||| ||||||| || || |||| ||| | || || | |||||||| Sbjct 534 TTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCGGAGTTGAGGCGG 475 Query 80578 TCCTTATATTTGTTAACTACATCCATGGTGA-----TACTT-GAAATAATCGGAGAAT-- 80629 || |||||| | | | | ||| ||| | ||| || || || || || | Sbjct 474 TC------TTTGTTCTCGAGAACGATGTTGAGCGTCTCCTTGGAGATCATGGGGGAGTGG 421 Query 80630 -GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGt 80688 |||| ||| || || || |||||| ||| |||||||||||| ||||| || | | Sbjct 420 CGTTT---ATTCAAGGGGTTGACGTAGTTGTATAGATCCTCCATCACGTCACTGAACACT 364 Query 80689 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 || || || |||||||| || ||||| ||||| || | || || | |||||||| || Sbjct 363 TTCTTCGTCTCCTTGTGGAGGTTTGAGACGGCAATCCGTGCAGCGAGGATGGCATAGTCG 304 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || |||| || || ||||| || || || ||||| || ||||||| || || || Sbjct 303 GGGTGTTTAGTTGTGAGCGTGGCGGCGATCTCCGCTGCTAGCGTGTCCAGCTCCACGGTG 244 Query 80809 GTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGA 80868 || || || | || | || || || |||||||| | || | ||||| | | Sbjct 243 GTGACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAG 184 Query 80869 TCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 80927 || | ||| | || || || | || || ||||| ||||||||||| |||||||| Sbjct 183 TCGGAGTTCAGCCCGTAGCAGAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 125 >seq123332 Length=1279 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || || || |||| Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 1101 CCACCACACGCTCTCC 1116 >seq34237 Length=22483 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || | || || || || ||||| | ||||| || ||||||||||| | ||| | Sbjct 12738 CCTCATCCCGGCTGATCAGCTCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCT 12797 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| | |||| || ||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 12798 TTAGCCAGTAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAG 12857 Query 50102 CAACAAGTCTCTCTCC 50117 | ||||||| ||| || Sbjct 12858 CCACAAGTCGCTCCCC 12873 >seq44434 Length=8273 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||| || || || ||||| |||| ||||| | | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||||||||| || || ||||| || || | || || ||||||| || ||| Sbjct 2776 ACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTGC 2835 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| || || || | || | ||| | | | ||| ||||||||||| Sbjct 2836 TCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGGC 2895 Query 80059 TCCAAGTA 80066 |||| ||| Sbjct 2896 TCCAGGTA 2903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717074121461680