Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq97926 461 1e-124 seq44434 105 9e-18 seq123333 95.1 2e-14 seq123332 93.3 6e-14 seq34237 93.3 6e-14 seq123334 84.2 3e-11 >seq97926 Length=3727 Score = 461 bits (510), Expect = 1e-124 Identities = 1291/1974 (65%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 |||||||||||| | || || | | || || ||||| || |||| | | || Sbjct 2089 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCG 2030 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || || || | || || |||||||| || | || || ||||| || | ||||| Sbjct 2029 CTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCT 1970 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 1969 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 1910 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || |||||||| || |||| ||| ||||| || || | || ||| ||| Sbjct 1909 GGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGAT 1850 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | || Sbjct 1849 CTTCTCCTTCAGCAGCTTCC-AGTCCCACAGGTCTGTCGGCGTCTTCTCCCACATGTCAT 1791 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || | || ||| || || ||||| | || | | Sbjct 1790 ACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGC 1731 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 ||| || || || || ||||| | | | || || ||||| ||||| |||| | | Sbjct 1730 GGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGT 1671 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 |||| || || || ||||| ||||| || ||| | || || || || || || | Sbjct 1670 TGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCA 1611 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 |||||| || || || ||||| || ||||| | ||| || || | || ||||| || | Sbjct 1610 GTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCA 1551 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 || || | || || || || || || || || ||| | || ||||||||| ||| | Sbjct 1550 CTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGT 1491 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAG 71704 ||||| ||| ||||| ||| || | || ||| ||| | || | | Sbjct 1490 AGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATGG 1431 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | ||||||||||| || || ||||| | || || |||| | || || ||||| | Sbjct 1430 ACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGA 1371 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 | || || || |||||||| || | ||| || || || ||||| |||| || || || | Sbjct 1370 GGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1311 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 | || || || |||| ||||| ||||| |||| || || ||||| || | ||| | Sbjct 1310 TGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTT 1251 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 ||||||| | | | |||| | || | || |||| || || | | Sbjct 1250 GCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCT 1191 Query 71945 CGAACTCGTCTCCCCAAGCATTG-TCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | ||||| || ||||| ||| | || | |||||| || ||||||||||||| ||| Sbjct 1190 CAAACTCCTCCCCCCA-GCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGAC 1132 Query 72004 CACTCTCCATCATCATTT--ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 72060 || ||| | | ||| |||| ||||| ||||| || || ||||| || || || Sbjct 1131 CAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGTAG 1075 Query 72061 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 72120 || || ||||||| ||| |||||||| || ||||| || || || || || | |||| | Sbjct 1074 AAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTCA 1015 Query 72121 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCT 72180 | | |||| | |||||||| |||| ||| ||||| | |||| || | ||||| ||| Sbjct 1014 AACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCT 955 Query 72181 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 72240 ||||| || | ||| | || ||||| || |||||||||| ||| || | | || ||| Sbjct 954 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTG 895 Query 72241 GATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGA 72300 || || ||||| |||| ||| ||||| || | | | || ||| | | | Sbjct 894 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACG 835 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| || || ||| ||||| | ||||| | || | ||| ||||| ||||| Sbjct 834 CCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCT 775 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || || || || ||| ||||| || || || ||||| |||| || | | | ||| Sbjct 774 TCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTT 715 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || || || || | || || || ||||| || ||||| || || ||||| || ||||| Sbjct 714 CCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAG 655 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 ||||| || ||| || |||| | || ||||| |||| || | ||| | ||| Sbjct 654 GTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATG 595 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 ||||| |||| || | | ||| || || ||||||| |||||| |||| ||| Sbjct 594 TGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTC 535 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTA 72660 || || ||||| ||||||| || || |||| ||| | || || | || ||||| Sbjct 534 TTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCGGAGTTGAGGCGG 475 Query 72661 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTTT 72716 || || | | | ||| || | | || | ||| || || || || || | |||| Sbjct 474 TCTTTGTTCTCGAGAACGATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT 416 Query 72717 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 72776 ||| || || || |||||| ||| |||||||||||| ||||| || | ||| || Sbjct 415 ---ATTCAAGGGGTTGACGTAGTTGTATAGATCCTCCATCACGTCACTGAACACTTTCTT 359 Query 72777 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 || |||||||| || ||||| ||||| || | || || || |||||||| || || || Sbjct 358 CGTCTCCTTGTGGAGGTTTGAGACGGCAATCCGTGCAGCGAGGATGGCATAGTCGGGGTG 299 Query 72837 TTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 72896 || || || ||||| || || || ||||| || ||||||| || || || || || Sbjct 298 TTTAGTTGTGAGCGTGGCGGCGATCTCCGCTGCTAGCGTGTCCAGCTCCACGGTGGTGAC 239 Query 72897 TCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGT 72956 || | || | || || || |||||||| | || | ||||| | | || | Sbjct 238 GCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCGGA 179 Query 72957 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATAAC 73010 ||| | || || || | || || ||||| ||||||||||| ||||| || Sbjct 178 GTTCAGCCCGTAGCAGAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 125 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || | |||| ||| | || || || ||||| || | Sbjct 2630 TCCAGCCGTAGAAGTGCATGCTGGTCAATTTGCCGTAGTTTGGCTCTGCGATGTGGATGT 2571 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||||||||| || |||||||| || | ||| || ||||| || | | |||| Sbjct 2570 TCAGGGACTGACTTTGGTCAATGAAGGCGCCACGGTCGGCGGCCATCTTGAGAACTGTCT 2511 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | ||||||||| | |||||||| | |||| | ||| ||||||| Sbjct 2510 TCTGAGAAATTTCCCAGACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 2460 >seq44434 Length=8273 Score = 105 bits (116), Expect = 9e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||| || || || ||||| |||| ||||| || | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| || ||||||| || || ||||| || | ||||||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| || || | || || ||||||| || ||| Sbjct 2776 ACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTGC 2835 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| || || || | || | ||| | | | ||| ||||||||||| Sbjct 2836 TCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGGC 2895 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 2896 TCCAGGTA 2903 >seq123333 Length=523 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 ||||||||||| | || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 156 TATGTATCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAA 215 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 || ||||||||||||||||| || ||||| ||||| Sbjct 216 CCATAGAAACATCTGGCCTCTGTCACCTGCACTTC 250 >seq123332 Length=1279 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || |||| Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 42207 C 42207 | Sbjct 1101 C 1101 >seq34237 Length=22483 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| | || || | || ||||| | ||||| || ||||||||||| | ||| | Sbjct 12738 CCTCATCCCGGCTGATCAGCTCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCT 12797 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| | || | || ||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 12798 TTAGCCAGTAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAG 12857 Query 42207 CAATAAGTCTCTCTCC 42222 | | ||||| ||| || Sbjct 12858 CCACAAGTCGCTCCCC 12873 >seq123334 Length=530 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 42341 TCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 42400 ||||| | || || ||||| ||||| || ||||| || ||||| ||||| || || ||| Sbjct 1 TCGATGAGGAGGCTGTACATCTCTGAGTGGATGTTCTCCATGGCGATCTGGAAACCATAG 60 Query 42401 AAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||||||||||| || ||||| ||||| Sbjct 61 AAACATCTGGCCTCTGTCACCTGCACTTC 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670022910947120