Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq131184 89.7 3e-13 seq5567 89.7 3e-13 seq724 89.7 3e-13 seq28074 87.8 9e-13 seq92574 86.0 3e-12 seq75879 86.0 3e-12 seq70047 84.2 1e-11 seq97832 82.4 4e-11 seq78626 82.4 4e-11 seq58346 82.4 4e-11 seq16836 82.4 4e-11 seq16835 82.4 4e-11 seq16832 82.4 4e-11 seq12521 82.4 4e-11 >seq131184 Length=2373 Score = 89.7 bits (98), Expect = 3e-13 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 1803 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 1744 Query 11515 CTGAGCTAATGGGCCGTCGACGATTGTGATTTTTC 11549 ||||||||| |||| | ||| || ||| |||||| Sbjct 1743 CTGAGCTAACCGGCCAT-GAC-ATAGTGGTTTTTC 1711 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 2249 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 2190 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2189 CTGAGCTAACCGGCC 2175 >seq5567 Length=4080 Score = 89.7 bits (98), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 1/95 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 2417 AAAAACGAAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 2358 Query 11505 CTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||| |||||||||||||| |||| | |||| || Sbjct 2357 CTCTAACCAACTGAGCTAACCGGCCAT-GACGCTT 2324 >seq724 Length=10125 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | | ||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 1322 AAAAAAGCTAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 1381 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 1382 GCTCTAACCAACTGAGCTAACCGGCC 1407 >seq28074 Length=7879 Score = 87.8 bits (96), Expect = 9e-13 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| |||| | ||||| | |||||||||| ||||||| ||||||||||||| Sbjct 7168 AAGAAAAACTCAAGT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 7110 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||| |||| Sbjct 7109 CACGCTCTAACCAACTGAGCTAACCGGCC 7081 >seq92574 Length=3160 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAA-TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| || | ||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 406 AAAAAACACAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 347 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 346 GCTCTAACCAACTGAGCTAACCGGCC 321 >seq75879 Length=2838 Score = 86.0 bits (94), Expect = 3e-12 Identities = 68/80 (85%), Gaps = 2/80 (3%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1836 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1777 Query 11528 CCGTCGACGATTGTGATTTT 11547 || | ||| || ||||| || Sbjct 1776 CCAT-GAC-ATGGTGATATT 1759 >seq70047 Length=57693 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 7723 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 7664 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7663 CTGAGCTAACCGGCC 7649 >seq97832 Length=8098 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 177 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 118 Query 11528 CC 11529 || Sbjct 117 CC 116 >seq78626 Length=3612 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2169 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2110 Query 11528 CC 11529 || Sbjct 2109 CC 2108 >seq58346 Length=1474 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 609 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 668 Query 11528 CC 11529 || Sbjct 669 CC 670 >seq16836 Length=1132 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 355 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 296 Query 11528 CC 11529 || Sbjct 295 CC 294 >seq16835 Length=981 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 373 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 314 Query 11528 CC 11529 || Sbjct 313 CC 312 >seq16832 Length=4723 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2832 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2773 Query 11528 CC 11529 || Sbjct 2772 CC 2771 >seq12521 Length=1263 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 337 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 278 Query 11528 CC 11529 || Sbjct 277 CC 276 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1242 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1183 Query 11528 CC 11529 || Sbjct 1182 CC 1181 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261067141518712