Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq80746 141 1e-28 seq85800 132 7e-26 seq80745 116 5e-21 seq70431 86.0 9e-12 seq70430 84.2 3e-11 >seq80746 Length=1457 Score = 141 bits (156), Expect = 1e-28 Identities = 180/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| || || || || | ||| | | | |||||||| Sbjct 543 GGACACCACTTGGTGTTGAGGCACACCAGCTTCTTCAAAGTGGAAGTTTTGACGATATTG 484 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||| ||||| || ||||||||||| ||||||||| | ||||||||||| ||| Sbjct 483 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAATCTGGGGAGCAGATAGGGTTT 424 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| |||||||| ||||| || ||||| |||| ||| | || |||||||| || || Sbjct 423 CCCATCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCTACCATACTCTCACCAAATATA 364 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | | ||||||| | | |||| |||| |||| ||| ||||||| ||| || ||||| Sbjct 363 CTGCTAGGACGGGTCCTCTCCAGTAAGACGCCGGGGTAGAACTCCAAAGCATCTATGTCA 304 Query 8933 CCGTAAAG 8940 || ||||| Sbjct 303 CCATAAAG 296 >seq85800 Length=16958 Score = 132 bits (146), Expect = 7e-26 Identities = 184/256 (72%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || ||||| | |||||||| ||||||||||| || |||||| ||| || || || Sbjct 13576 TCACCGATCAGAATGAGTCGTGTGGTCTGAAAGAGCCTTTCGTCGTCCCAGTCAGGGTGA 13517 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 || |||| || || || |||||||||||||| | ||||||||| || || |||||| Sbjct 13516 ACTTCCTTCAACACGTCACATACTCTGTTGTGTTCACGGAGCCAGATGGTGGCATACATC 13457 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || |||||||| ||||||||||| ||||| || || ||||| | || | || || Sbjct 13456 ATCAGACCAGGGACCAGGCCAAATGCCTCATGGCCCACAGCGAAGCGGTGAGAGTCAGGG 13397 Query 9790 ACTTCGGGAGGATAGATCATGT--GCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 || | ||||| ||| ||||| ||||| ||||| || || | ||||| || | | Sbjct 13396 ACGTGAGGAGGGTAGTGCATGTCAGCACC--CACATCCTTTACTGTTGGGGGGTAGACCT 13339 Query 9848 CACCGTCAATAATCTG 9863 | || || | | |||| Sbjct 13338 CTCCTTCCAGAGTCTG 13323 Score = 120 bits (132), Expect = 4e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || |||||||||||||| |||||||| ||||||||||||| ||| ||| | ||| Sbjct 15537 CCCCCGAAGGTGCTGGGCTTCCAGTACTGCGGGGAGCAGATGGGGTTTCCCAATAAGCCC 15478 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 |||||||| || || ||||||| ||| | ||| |||| || |||||||| || | | Sbjct 15477 TTGAGGGAGAAAGGGGCCCCCATCTCCACCATGGTCTCTCCAAAGATGGCATTTTCCCTG 15418 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 || || ||||||| | || | ||| | ||||||||| || | || ||| || | || Sbjct 15417 GGTTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACAGCGTCAACGTGTCCATACATCTCC 15358 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||| ||||| || ||||||| Sbjct 15357 TCCAGCAATGCAGCCATTTCTTTCTCTCCTG 15327 >seq80745 Length=10871 Score = 116 bits (128), Expect = 5e-21 Identities = 175/248 (71%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 9608 TTTCCC--CGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGG 9665 |||||| | || |||| ||| | | ||||| || || || ||||| ||| || Sbjct 6720 TTTCCCACCTATGATGACGAGCCTGGCAGTCTGGAAGAGCTGCTCGTCGTCCCAGGTGGG 6661 Query 9666 ATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTA 9725 ||||||| ||||| | || || |||||||| || ||||| ||||| || || ||||| Sbjct 6660 ATGTTCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCATATGGTGGCGTA 6601 Query 9726 CATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTC 9785 ||| |||| || |||| || |||| || |||| ||||| | ||||||||| || || Sbjct 6600 CATAGTGAGGCCCGGCAGCATGCCATAAACCTCCTGACCAATGGCCAGACGCTGATCTTG 6541 Query 9786 GGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACAT 9845 || || | |||||| | ||||||||| || | || || ||||||||||| Sbjct 6540 AGGGACGTTTTTAGGATACAACATGTGCACAGGGGCTTCAGATACTAGAGGGGGATACAT 6481 Query 9846 TTCACCGT 9853 ||||||| Sbjct 6480 CTCACCGT 6473 >seq70431 Length=1334 Score = 86.0 bits (94), Expect = 9e-12 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 8751 CAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGT 8810 |||| || || | || || ||||||||||| ||||||||| | || || || || || Sbjct 470 CAAAGCCAACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAACATATAGGGT 411 Query 8811 TCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGA 8870 | ||| |||||||| ||||| ||||| || |||| ||| | |||||||| || || | Sbjct 410 TTCCCAGAAGGCCTTTAAGGGAGAACGGGGCGCCCATCTCCACCATGCTCTCCCCAAATA 351 Query 8871 TGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGT 8930 |||| | || | | |||| || | |||| || || || | |||||| |||| Sbjct 350 TGGCCCCCGCTCGTGTTCTCTCCAACATCATGCCGGGATAAAATTCAAGAGCCTCAATGT 291 Query 8931 CTCCGTA 8937 | || || Sbjct 290 CACCATA 284 >seq70430 Length=28525 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || |||||||| || | |||||| || || ||||| ||| |||| ||||| Sbjct 26551 TCACCAATGATGATGAGGCGGGAGGTCTGGAAAAGCTGTTCATCATCCCATGTGGGATGC 26492 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 ||| |||||| | || || |||| ||| || ||||| ||||| | ||||||||||| Sbjct 26491 TCTGCTTTCAGGATGTCACAGACTCGGTTATGCTCCCTCAGCCACAGCGTAGCGTACATT 26432 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGC 9770 | |||||| | || || || | || ||||| | ||| Sbjct 26431 CCCAAACCAGGGAGGAGTCCGAACACTTCCTGACCAATAGC 26391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707346328413280