Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq131555 196 8e-46 seq85047 178 2e-40 seq93386 168 1e-37 seq112346 163 4e-36 >seq131555 Length=2308 Score = 196 bits (216), Expect = 8e-46 Identities = 204/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | ||| || ||||||||||| ||||||||||| || || || Sbjct 374 CGCTAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 433 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 434 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 493 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| ||||||| || ||| ||||| Sbjct 494 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCTGTCACCTACACCGA 553 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || ||| |||| | || || Sbjct 554 GCACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCACTGAAGAGGCAGGG 613 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 614 CCGCACCCTGTACGGCTTCGGAGGTTAA 641 >seq85047 Length=10765 Score = 178 bits (196), Expect = 2e-40 Identities = 200/268 (75%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | | ||| || ||||||||||| ||||||||||| || || || Sbjct 10234 CGCCAAGCGTCACCGTAAAGTTCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 10293 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || ||||||||||||||| |||| || || |||| || |||| Sbjct 10294 CCGCCGTCTGGCTCGCCGCGGTGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 10353 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 10354 TCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGA 10413 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || ||| ||||||| | || || || | || | || || Sbjct 10414 ACACGCCAAGAGAAAGACCGTGACCGCCATGGACGTGGTGTACGCGCTCAAGAGGCAGGG 10473 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 10474 CCGCACCCTGTACGGCTTCGGAGGTTAA 10501 >seq93386 Length=662 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| || | | || || ||||||||||| ||||||||||| || || || Sbjct 22 CGCTAAGCGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 81 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| || || || || |||||| |||| || || |||| || |||| Sbjct 82 CCGCCGTCTGGCTCGCCGCGGCGGCGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 141 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| |||||| || ||| ||||| Sbjct 142 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGATGCCGTCACCTACACCGA 201 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| ||||||| | || || || |||| | || || Sbjct 202 GCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTTTACGCGCTGAAGAGGCAGGG 261 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 262 CCGCACCCTGTACGGCTTCGGAGGTTAA 289 >seq112346 Length=1634 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| ||||| || | | || || ||||||||||| ||||||||||| || || || Sbjct 298 CGCTAAACGTCACCGTAAAGTCCTCCGTGATAACATCCAGGGAATCACCAAACCCGCCAT 239 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| || || |||| || |||| Sbjct 238 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 179 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| || |||| |||||| || ||| ||||| Sbjct 178 CCGCGGAGTGTTGAAGGTGTTCCTGGAGAATGTGATCCGTGATGCCGTCACCTACACCGA 119 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||| || ||| |||||||| | || ||||| |||| | || || Sbjct 118 GCATGCCAAGAGAAAGACCGTGACCGCCATGGATGTGGTTTATGCTCTGAAGAGGCAGGG 59 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || || || ||| ||||| Sbjct 58 ACGCACTCTGTACGGCTTCGGAGGTTAA 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78953540481966