Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq97926 504 9e-138 seq123332 111 2e-19 seq34237 105 8e-18 seq44434 96.9 4e-15 >seq97926 Length=3727 Score = 504 bits (558), Expect = 9e-138 Identities = 1300/1974 (66%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 |||||||||||| | || || | | ||||| ||||| || |||| | | || Sbjct 2089 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCG 2030 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 ||| || || || | || || || ||||| || | || || ||||| || | ||||| Sbjct 2029 CTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCT 1970 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 1969 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 1910 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482 || || || |||||||| || |||| ||| | ||| || || | |||| | | ||| Sbjct 1909 GGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGAT 1850 Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542 || || || || | | ||| | ||| || || | ||| | | Sbjct 1849 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGG--CGTCTTCTCCCACATGTCA 1792 Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600 | || || || || || ||| | || ||| || || ||||| | || | || Sbjct 1791 TACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCG 1732 Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660 || || || || || ||||| | | | |||| || ||||| |||||||||| | Sbjct 1731 CGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATG 1672 Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || || || || || |||| ||||| || ||| | || || || || ||||| Sbjct 1671 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCC 1612 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 | |||||| ||||| || ||||| || || || | ||| || || | || ||||| || Sbjct 1611 AGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGC 1552 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | || || | || || || || || || || || ||| | || ||||||||| ||| Sbjct 1551 ACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACG 1492 Query 62841 TCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAAGGCAACA 62897 | |||||| ||| ||||| ||| || | || ||||||| | || | Sbjct 1491 TAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 1432 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || ||||||||||| || || ||||| | || | |||| | ||||| ||||| Sbjct 1431 GACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAG 1372 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 || || || || ||||| || || | ||| || || || ||||| |||| || || || Sbjct 1371 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1312 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 || || || ||| | || ||||| ||||| |||| || || ||||| || | ||| | Sbjct 1311 TTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGT 1252 Query 63078 ACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGT 63137 ||||||| | | | ||| | | || | || ||| || || | Sbjct 1251 TGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCC 1192 Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 || ||||| || ||||| | |||| |||||| || | ||||||||||| ||| Sbjct 1191 TCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGAC 1132 Query 63198 CACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA- 63254 || ||| || | ||| ||||| ||||| ||||| || || ||||| || || || Sbjct 1131 CAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGTAG 1075 Query 63255 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63314 || || ||||||| ||| || ||||| || ||||| || || || || || | |||| | Sbjct 1074 AAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTCA 1015 Query 63315 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63374 | | |||| | |||||||| |||| ||| ||||| | |||| || | ||||| ||| Sbjct 1014 AACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCT 955 Query 63375 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTT 63434 ||||| || | ||| | || ||||| || |||||||||| ||| || | | ||||| Sbjct 954 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTG 895 Query 63435 GATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63494 || | || ||||| |||| ||| ||||| || | | | || || | | | Sbjct 894 GAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACG 835 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || ||||| || || ||| ||||| | ||||| | || | ||||||||| || || Sbjct 834 CCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCT 775 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63614 || ||||| || || ||||| || || || ||||| |||| || | | | ||| Sbjct 774 TCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTT 715 Query 63615 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTAC 63674 || || || || | || || || ||||| || ||||| || || || || || ||||| Sbjct 714 CCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAG 655 Query 63675 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63734 ||||| || ||| || |||| | || ||||| || | || | ||| | |||| Sbjct 654 GTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATG 595 Query 63735 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63794 ||||| |||| || | | ||| ||| || ||||||| |||||| |||| ||| Sbjct 594 TGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTC 535 Query 63795 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63854 || || ||||| ||||||| || || |||| ||| | || || | |||||||| Sbjct 534 TTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCGGAGTTGAGGCGG 475 Query 63855 TCCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTTT 63910 || || | | | ||| || | | || | ||| || || || || || | |||| Sbjct 474 TCTTTGTTCTCGAGAACGATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT 416 Query 63911 CCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttt 63970 ||| || || || |||||| ||| |||||||||||| ||||| || | ||| || Sbjct 415 ---ATTCAAGGGGTTGACGTAGTTGTATAGATCCTCCATCACGTCACTGAACACTTTCTT 359 Query 63971 tGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || |||||||| || ||||| ||||| || | || || || |||||||| || || || Sbjct 358 CGTCTCCTTGTGGAGGTTTGAGACGGCAATCCGTGCAGCGAGGATGGCATAGTCGGGGTG 299 Query 64031 TTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTAC 64090 || || || ||||| || || || ||||| || ||||||| || || || || || Sbjct 298 TTTAGTTGTGAGCGTGGCGGCGATCTCCGCTGCTAGCGTGTCCAGCTCCACGGTGGTGAC 239 Query 64091 TCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGT 64150 || | || | || ||||| |||||||| | || | ||||| | | || | Sbjct 238 GCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCGGA 179 Query 64151 GTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATCAAACATGAC 64204 ||| | || || || | || || ||||| ||||||||||| |||||||| Sbjct 178 GTTCAGCCCGTAGCAGAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 125 >seq123332 Length=1279 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || |||| |||||| || ||||| ||||||||||| || || ||||| |||| Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 33446 C 33446 | Sbjct 1101 C 1101 >seq34237 Length=22483 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || | || || || || ||||| | ||||| || ||||||||||| | ||| | Sbjct 12738 CCTCATCCCGGCTGATCAGCTCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCT 12797 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| | |||| ||||||||| ||||| |||||||| ||||| ||||| ||||| | Sbjct 12798 TTAGCCAGTAGATGGCAGCGAATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAG 12857 Query 33446 CAATAAGTCTCTCTCC 33461 | | ||||| ||| || Sbjct 12858 CCACAAGTCGCTCCCC 12873 >seq44434 Length=8273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 |||| || | ||| || || || ||||| || || || ||||| |||| ||||| || | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074 | ||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 || || || || |||||| | || | || || || |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 |||||||||||||||||| || || ||||| || || | || || ||||||| || || Sbjct 2775 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTG 2834 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 ||||| || ||||| || || || | || | ||| | | | ||| ||||||||||| Sbjct 2835 CTCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGG 2894 Query 63335 TTCCAAGTA 63343 |||| ||| Sbjct 2895 CTCCAGGTA 2903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621911067495920