Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq97926 291 8e-74 seq44434 113 4e-20 seq92941 84.2 2e-11 >seq97926 Length=3727 Score = 291 bits (322), Expect = 8e-74 Identities = 983/1510 (65%), Gaps = 42/1510 (3%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||| ||| ||||| |||| | || | || || | ||| ||| ||| Sbjct 2003 GATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGG 1944 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 || | ||||||||| ||||||||||| || ||||| | || || ||||| |||| Sbjct 1943 CCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCA 1884 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 ||| | || | || |||||| || ||| | ||||| ||| ||| |||| Sbjct 1883 TCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCC 1824 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || |||||| || ||||||||||| ||||| | ||||||| |||| | || Sbjct 1823 ACAGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGACAGGAG 1764 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTT--GGCGAGCTCGCAACTCGCCTCCAG 145353 |||||| | | ||| || || | | ||| || ||||| || |||||||| Sbjct 1763 AGCCTTGGTACGTCTCGTAG--GCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAG 1706 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 | || | || || |||||| || || ||||||||||| || || ||| || Sbjct 1705 GGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTC 1646 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | || |||| ||| | || ||||| || || || || | || | ||||| || Sbjct 1645 AAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGG 1586 Query 145474 CCGATGTTTCATGTTG-----CTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCG 145528 || || | ||||| ||| | ||| ||| | ||| | | ||| ||| Sbjct 1585 CCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTT-GAT----GTCA 1531 Query 145529 ATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCA 145588 || || || |||| |||| ||| | ||| || || | || || |||| ||||||| Sbjct 1530 ATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCA 1471 Query 145589 AACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACT 145648 || | || | ||| | || | | |||| ||||| ||||||| |||||| || Sbjct 1470 AA--GGTCCGC-TCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACC 1414 Query 145649 GCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATG 145708 ||| ||| ||| | | |||||| |||||||| | ||| | ||||| ||||||||| Sbjct 1413 GCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATG 1354 Query 145709 GTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGT 145768 || |||||||| ||||| || || ||||||||||| ||||| ||||| |||||||||||| Sbjct 1353 GTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGT 1294 Query 145769 CCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGCACC 145825 || || || ||| | || | |||| ||| || | ||| || |||| Sbjct 1293 GTACCGGTTTCTGTCTGGGACT---CAATAATGGCGTGCCACAGTTGCTGAGCCTTCACC 1237 Query 145826 TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCG 145885 ||| | |||||||| | || ||||| |||||||| |||||||| | || Sbjct 1236 ACACGCTTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCC 1177 Query 145886 TAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCG 145945 |||| || ||| || ||| || ||| ||||||||||| ||||| | |||| Sbjct 1176 CAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTT 1117 Query 145946 TTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GCGCTT 146003 | || | || ||| || | || || | |||||| |||| | | ||| | || ||| Sbjct 1116 TCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTT 1057 Query 146004 TGCAATCCTCAGCACCCATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGC 146062 ||| ||||| || ||||| ||||| | ||| || | | | | || |||| Sbjct 1056 TGC--TCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTC-AAACACATCAAAGTGC 1000 Query 146063 CACGGTTCAATATAGACGGCGAGGGCTCC--TTTTCGT-TTGCCACCCTGGTCCACGTGA 146119 ||||| || | || | ||||| |||||| | || | ||||| |||||||| |||| | Sbjct 999 CACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAA 940 Query 146120 CGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTA 146179 ||| || ||||||| | || | || |||||| | | |||| ||| |||||| || Sbjct 939 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTG 880 Query 146180 GAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCG 146239 | || | | ||| || | | ||| ||| |||||| | || || | Sbjct 879 CCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCT 820 Query 146240 TACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 | ||||| || |||||| | ||||| || || ||||| || ||||| ||| | Sbjct 819 GATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCC 760 Query 146298 TTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAACA 146357 ||| ||| ||||||| ||||| | ||| ||| | | | || || || ||| | Sbjct 759 TTC--ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGA 702 Query 146358 ACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGCG 146416 || ||| ||||| || || || || || | || || || || ||||| || Sbjct 701 GAGTGGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTAGGTCTCGATGGCT 643 Query 146417 TCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGC 146476 || | ||| | | || || || || | | || | |||||||||||| || || ||| Sbjct 642 TCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATGTGCTGCGGTCGC 583 Query 146477 TCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCGA 146534 || ||||||| || ||||| |||| ||| ||| |||||| || ||| | || | Sbjct 582 TCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAA 525 Query 146535 AAAATTTGTA 146544 | || ||||| Sbjct 524 AGAAGTTGTA 515 >seq44434 Length=8273 Score = 113 bits (124), Expect = 4e-20 Identities = 92/112 (82%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||| | |||||| |||||||||| |||||||| ||||| | Sbjct 2283 TGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 2342 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 | || || |||||||| |||||||||||||||||||| ||| ||| || || Sbjct 2343 TGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 2394 >seq92941 Length=5299 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||| || | ||| | ||| |||||||| || |||||||| ||| Sbjct 5182 CCACCCCTCAGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 5241 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | |||||| || || ||||||||||| ||| |||| || | ||||||||| || Sbjct 5242 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCAGG 5297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471227712910080