Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq115732 136 3e-27 seq66582 123 2e-23 seq84552 122 6e-23 seq115734 104 2e-17 seq4057 96.9 2e-15 >seq115732 Length=2673 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 2257 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 2316 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2317 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2351 >seq66582 Length=12172 Score = 123 bits (136), Expect = 2e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 6320 CCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGA 6379 |||||| || | ||| || || ||||| ||||||||||| ||||||||| ||||||||| Sbjct 11576 CCCGACCAAGTTTTTTGGTTGTGAACTCGGCGCTCAGACCCAGTTTGATTCCAAAAACGA 11635 Query 6380 GCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTT 6439 || | |||||| |||||||| || | | |||| |||||||| | ||||| || || Sbjct 11636 CCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGTT 11695 Query 6440 TATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || | || ||||||||||||| || || || ||||| || || || || Sbjct 11696 CATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 11746 >seq84552 Length=12394 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| Sbjct 3111 AAGCCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 3052 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 3051 TCATCCATTCATGCGCGTCACTAATTAGATGAAGA 3017 >seq115734 Length=4856 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 3889 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 3830 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 3829 GCCAATATTTAGCTTTA 3813 >seq4057 Length=18368 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 |||||||| |||||||||||||||||||||| | |||||||||| |||||||||||| | Sbjct 15561 TCTCTCTTTAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTTGACTATCGGTCTCGTG 15502 Query 20008 GTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 15501 CTGGTATTTAGCCTTA 15486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334404018428522