Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq97926 493 2e-134 seq44434 102 1e-16 seq34237 87.8 2e-12 >seq97926 Length=3727 Score = 493 bits (546), Expect = 2e-134 Identities = 1300/1976 (66%), Gaps = 25/1976 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||||||||| | || || | | ||||| ||||| || |||| | | || Sbjct 2089 CTGAATGGATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCTCG 2030 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || || || | || || || ||||| || | || || ||||| || | ||||| Sbjct 2029 CTCCGTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCT 1970 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || | || | |||||| || || |||| || || || Sbjct 1969 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGC 1910 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || |||||||| || |||| ||| | ||| || || | |||| | | ||| Sbjct 1909 GGTGGACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGAT 1850 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62397 || || || || | | ||| | ||| || || | ||| | | Sbjct 1849 CTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCTGTCGG--CGTCTTCTCCCACATGTCA 1792 Query 62398 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62455 | || || || || || ||| | || ||| || || ||||| | || | || Sbjct 1791 TACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCG 1732 Query 62456 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62515 || || || || || ||||| | | | |||| || ||||| |||||||||| | Sbjct 1731 CGGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATG 1672 Query 62516 TTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 62575 || || || || || |||| ||||| || ||| | || || || || || || Sbjct 1671 TTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCC 1612 Query 62576 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62635 | |||||| ||||| || ||||| || || || | ||| || || | || ||||| || Sbjct 1611 AGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGC 1552 Query 62636 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62695 | || || | || || || || || || || || ||| | || ||||||||| ||| Sbjct 1551 ACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACG 1492 Query 62696 TCCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACA 62752 | |||||| ||| ||||| ||| || | || ||||||| | || | Sbjct 1491 TAGGCCAGTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTACATGTTGAGAGCGATG 1432 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || ||||||||||| || || ||||| | || | |||| | ||||| ||||| Sbjct 1431 GACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAG 1372 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 || || || || |||||||| || | ||| || || || ||||| |||| || || || Sbjct 1371 AGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 1312 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 || || || ||| | || ||||| ||||| |||| || || ||||| || | ||| | Sbjct 1311 TTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGT 1252 Query 62933 ACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT--GTATACAATC 62990 ||||||| | | | ||| | | ||| ||| ||| | || || | Sbjct 1251 TGCTGAGCCTTCACCACACGCTTGA--CCCGGCCCTCCTTCTCATATTTGGTGTAGAGCG 1194 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACG 63050 || ||||| || ||||| | ||||| |||||| || | ||||||||||| | Sbjct 1193 CCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAG 1134 Query 63051 ACCACTCTCCGTCATCCTT--CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 |||| ||| || | ||| ||||| ||||| ||||| || || ||||| || || | Sbjct 1133 ACCAGTCTTGGT--TGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGT 1077 Query 63109 A-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACG 63167 | || || ||||||| ||| || ||||| || ||||| || || || || || | |||| Sbjct 1076 AGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACT 1017 Query 63168 CCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTC 63227 | | | |||| | |||||||| |||| ||| ||||| | |||| || | ||||| | Sbjct 1016 CAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGC 957 Query 63228 CTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCAT 63287 ||||||| || | ||| | || ||||| || |||||||||| ||| || | | || | Sbjct 956 CTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGT 897 Query 63288 TGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATA 63347 |||| | || ||||| || | ||| ||||| || | | | || || | | | Sbjct 896 TGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCA 837 Query 63348 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 63407 || ||||| || || ||| ||||| | ||||| | || | ||| ||||| |||| Sbjct 836 CGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGC 777 Query 63408 CCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAG 63467 | || || || || ||| ||||| || || || ||||| |||| || | | | | Sbjct 776 CTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGG 717 Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGT 63527 |||| || || || | || || || ||||| || ||||| || || || || || |||| Sbjct 716 TTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGT 657 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACA 63587 | ||||| || ||| || |||| | || ||||| || | || | ||| | || Sbjct 656 AGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCA 597 Query 63588 TGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAG 63647 ||||||| |||| || | | ||| ||| || ||||||| |||||| |||| || Sbjct 596 TGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAG 537 Query 63648 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 | || || ||||| ||||||| || || |||| ||| | || || | |||||||| Sbjct 536 TCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAGATGATGGCGGAGTTGAGGC 477 Query 63708 TATCCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATAGGAAAAT---GT 63763 || || | | | ||| | | | || | ||| || || || || | | || Sbjct 476 GGTCTTTGTTCTCGAGAACGATGTTGAGCGT-CTCCTTGGAGATCATGGGGGAGTGGCGT 418 Query 63764 TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 63823 || ||| || ||||| |||||| ||| |||||||||||| ||||| || | ||| Sbjct 417 TT---ATTCAAGGGGTTGACGTAGTTGTATAGATCCTCCATCACGTCACTGAACACTTTC 361 Query 63824 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 63883 || || || ||||| || ||||| ||||| || | || || || |||||||| || || Sbjct 360 TTCGTCTCCTTGTGGAGGTTTGAGACGGCAATCCGTGCAGCGAGGATGGCATAGTCGGGG 301 Query 63884 TGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTT 63943 |||| || || ||||| || || || ||||| || ||||||| || || || || Sbjct 300 TGTTTAGTTGTGAGCGTGGCGGCGATCTCCGCTGCTAGCGTGTCCAGCTCCACGGTGGTG 241 Query 63944 ACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCA 64003 || || | || | || || || |||||||| | || | ||||| | | || Sbjct 240 ACGCCGCTGTACAAACCCTGAATCACCTTCATCGTAATCTGGGCCGGATCCACAAAGTCG 181 Query 64004 GTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATCAAACATGAC 64059 | ||| | || || || | || || ||||| ||||||||||| |||||||| Sbjct 180 GAGTTCAGCCCGTAGCAGAGCTTCTGGATGCGAGAGGTGATTTTATCGAACATGAC 125 >seq44434 Length=8273 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| || || |||||||| || || || ||||| |||| ||||| || | Sbjct 4343 CACTGAAGACTTTCTTGGTCTCTTTGTGCAGGTTAGACACGGCGATTCGTGCGGCCAGGA 4402 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || ||||||| || || ||||| || | || |||||||||||||||| Sbjct 4403 TTGCATAGTCAGGATGTTTGGTGGTGAGGGTGGCGGCAGTCTCTGCTGCCAGAGTGTCCA 4462 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||| | || | || ||||| |||||||| Sbjct 4463 GCTCCACAGTGGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 4508 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||||||||||||||| || || ||||| || || | || || ||||||| || || Sbjct 2775 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTG 2834 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| || || || | || | ||| | | | ||| ||||||||||| Sbjct 2835 CTCCTCTTTACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGG 2894 Query 63190 TTCCAAGTA 63198 |||| ||| Sbjct 2895 CTCCAGGTA 2903 >seq34237 Length=22483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || ||||| | ||||| || ||||||||||| | ||| || ||||| | |||| || Sbjct 12758 TCATTGGAGTAGGTGAGGCCAGGCATTAGGCCTCTCTTCTTTAGCCAGTAGATGGCAGCG 12817 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 32818 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||||| ||| || Sbjct 12818 AATGAGCCAGAGAAGAAGATGCCTTCCACTGCTGCAAAAGCCACAAGTCGCTCCCC 12873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632578095735200