Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq97926 538 6e-148 seq123332 114 2e-20 seq44434 104 4e-17 seq98821 96.9 7e-15 seq16793 95.1 2e-14 seq98823 93.3 8e-14 seq34237 91.5 3e-13 >seq97926 Length=3727 Score = 538 bits (596), Expect = 6e-148 Identities = 1098/1604 (68%), Gaps = 64/1604 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || |||||| Sbjct 2082 GATCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGTCCT---CGCTCC 2026 Query 244070 AGCGCCTC---GACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 | || || |||||| || || | ||| |||||||| || || || | ||| Sbjct 2025 GTCAAGTCTTTGAGCAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGG 1966 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 1965 GTGTAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTG 1906 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 ||| |||||||| || | || || ||||||||||||||||||||| | ||| Sbjct 1905 GACGCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTC 1846 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 | ||| ||||||||||||| | | | || || || |||||||| Sbjct 1845 TCCTTCAGCAGCTTCCAGTCCCACAGGTCTG-----TCGGCGTCTTCT----CCCACATG 1795 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-C 244365 ||| |||| || | ||||||||||| || ||| | ||| ||| ||||| |||| | Sbjct 1794 TCATACTGGAGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGC 1735 Query 244366 GCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 ||| ||||||| | ||||| | || |||| |||||||||||||||||||||||| Sbjct 1734 TCGC-GGGCCAGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTG 1676 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 |||| | | || | |||| | || |||||| | ||||| |||||| | | Sbjct 1675 GATGTTGA-GCAGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCAT 1617 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 | |||||||| || || ||||| ||||| || ||||| ||||||||||| | ||||| Sbjct 1616 CCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTT 1557 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGG 244603 ||||||| ||||| |||||| ||| || | |||||| ||||| ||| | | || Sbjct 1556 CGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGG 1497 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 | |||| |||||| | |||||| | || | ||| | | || Sbjct 1496 TC-ACGTAGGCCAGTTTTTTAAAGTCAAAG--GTCCG----CTCAGGGGTG--------- 1453 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 || || |||||| |||| | ||||| || ||||| |||||||| || ||||| Sbjct 1452 ACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTG 1393 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 || | || ||||| ||||||||||| ||||| |||||||||||||| | ||| || ||| Sbjct 1392 TATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTG 1333 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||||||||| ||||| |||||| | || ||||| || ||||| Sbjct 1332 CTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGAC 1273 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTGC 244902 | | | | || ||| || | | |||||| ||| | || | || |||||| Sbjct 1272 TCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACAC-GCTTGACCCGGCCCTCCTT 1214 Query 244903 CTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA 244962 ||| || |||||| || ||||| ||||| |||||| ||| || || || || Sbjct 1213 CTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGC 1154 Query 244963 CGACGCCGGGCACATGAGACTCCACTC---GCCGCCGTCCTTGACCCTCTGCATGAAGAG 245019 | ||| ||||| ||| ||| || | || ||| || |||| ||||||||| Sbjct 1153 CTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAG 1097 Query 245020 GTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTT 245079 ||| |||||||| ||| | | ||| ||||| |||| || ||||| ||| || ||||| Sbjct 1096 GTCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTT 1037 Query 245080 CTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAG 245139 ||| |||||||||| || ||||| || || | |||||| ||||||| ||| | |||| Sbjct 1036 TTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAA 977 Query 245140 GGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGC 245198 ||| ||||| | |||||||||||||||||| || | | | || | |||| | | | Sbjct 976 GGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTG-TTGTTGTAAACTC 918 Query 245199 GCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCC--TT 245256 ||| | || |||| |||||| |||| |||||||||||| |||||| || ||| || Sbjct 917 TCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTA-GCTCCCGGTT 859 Query 245257 GCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA 245316 | |||| | ||||| | || ||| | ||| || || ||||||||||||||||| Sbjct 858 G-ATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCA 800 Query 245317 GCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCA 245376 ||| | ||||| ||||| || |||||||| ||||||| |||||| ||||| Sbjct 799 CTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 740 Query 245377 GGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | ||||||||| ||| || | | | | |||||| ||||||||| ||||||||| || Sbjct 739 GCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAA 680 Query 245437 GTAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGA 245495 | | ||| || || | ||| |||| || | || || || | ||||||| Sbjct 679 CCA-CTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGA 621 Query 245496 TCTGCAGGGCG-CAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGG 245549 | | | || ||| |||||||| ||||||| || ||| | || | || || Sbjct 620 --TTCCGACCGACACTCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTGCCGT 567 Query 245550 GTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| | || |||||| ||||| || |||||||| |||||| Sbjct 566 TGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAG 523 >seq123332 Length=1279 Score = 114 bits (126), Expect = 2e-20 Identities = 103/127 (81%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | || || ||||| ||||||||||| || ||||||| ||||||||| Sbjct 1106 TGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1047 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1046 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 988 Query 42825 GACGAGG 42831 || |||| Sbjct 987 GATGAGG 981 >seq44434 Length=8273 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| || ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 1272 ACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCAATG 1331 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| ||||||| || ||||| || ||| || || |||||||| | || |||||| Sbjct 1332 GACTCATTGTTGCCGAGGATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGAGCAGA 1391 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 1392 CTGTTCCTCACACCATGCCT 1411 Score = 100 bits (110), Expect = 5e-16 Identities = 127/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 2266 CACCTCGTCTTTGCTTGTGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGT 2325 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||| | ||| || ||| ||| ||||||||||||||||||||||||| | || Sbjct 2326 GCCCAGATTCTGCTGGTTGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGT 2385 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACC 244879 ||||| || ||| | ||| |||| || ||| || | | |||||| ||| Sbjct 2386 GCCGGTTTCTGTCTGTGACTCGATGACGGCGTACCACAGCTGCTGAGCCTTCACC 2440 Score = 93.3 bits (102), Expect = 8e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 244322 CCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTT 244380 ||||||||||| || ||| ||||||| || || ||| || | | ||||||| Sbjct 1688 CCCTTGCTGACAGGAGAGCCAGCGTAGGTTTCATAAGGGCCGA-GCTCAGCTGCCAGCTC 1746 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 ||||| | || ||||| ||||||||||||||||| |||||| |||| | | || Sbjct 1747 GCAGCTGGCCTCCAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGGATGTTGA-GCAGCT 1805 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| || ||| ||| | ||| | || ||| |||| ||||| ||||||| Sbjct 1806 GGGCCTCCTGGCTTTCGAATGGGTAACGCATAAGAATAAAGGCGTCAGCCAGACCCTGCA 1865 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 | ||||| || || || ||||| |||||||| || Sbjct 1866 CTCCGATTCCAATTGGCCTGTGGCGCTTGTTTGA 1899 >seq98821 Length=8341 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1404 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1463 Query 43130 CGTCGCCGACTACCAG 43145 ||| | ||| |||||| Sbjct 1464 CGTGGGCGAGTACCAG 1479 >seq16793 Length=11601 Score = 95.1 bits (104), Expect = 2e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||| ||| |||| || ||| |||||| ||| |||||| ||||||||||||||| Sbjct 201 GACAGGAGCACGACGATAGGGCAGCTGATCAGCTCTTACCTGGAGAACAAGAGCGATCTG 142 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 || || ||| ||| ||| | |||||||| || ||||| |||||| Sbjct 141 GAGGACCACACCGTGCACTTGCTGTTCTCTGCAAACCGCTGGGAA 97 >seq98823 Length=7499 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 6809 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 6750 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 6749 TGTGGGCGAGTACCAG 6734 >seq34237 Length=22483 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||| | || || || ||| | || || || |||||||||||||| ||| | ||||| Sbjct 12873 GGGGAGCGACTTGTGGCTTTTGCAGCAGTGGAAGGCATCTTCTTCTCTGGCTCATTCGCT 12814 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 |||||| |||||| ||| ||| ||| | ||||| || ||||||| ||| || || || Sbjct 12813 GCCATCTACTGGCTAAAGAAGAGAGGCCT-AATGCCTGGCCTCACCTACTCCAATGAGCT 12755 Query 42815 CATCAGCAGGGACGAGG 42831 |||||| |||| |||| Sbjct 12754 GATCAGCCGGGATGAGG 12738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942768504217120