Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq42779 96.9 4e-15 seq108454 91.5 2e-13 seq50821 87.8 2e-12 seq92567 86.0 7e-12 seq50820 86.0 7e-12 seq41391 86.0 7e-12 seq111413 82.4 8e-11 seq72747 82.4 8e-11 >seq42779 Length=8654 Score = 96.9 bits (106), Expect = 4e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| || | | |||||||||| ||||||||||||||||||||| |||||||||| Sbjct 2756 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 2815 Query 57064 CTATACTACCGAGGATTG 57081 |||||||| |||||| || Sbjct 2816 CTATACTAACGAGGAGTG 2833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 5181 ATTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 5240 Query 57062 CACTATACTACCGAGGATTG 57081 |||||||||| |||||| || Sbjct 5241 CACTATACTAACGAGGAGTG 5260 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1115 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1174 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 1175 TACTAACGAGGAATG 1189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 4565 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 4624 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 4625 TACTAACGAGGACTG 4639 >seq108454 Length=5532 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/89 (83%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56997 GAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 ||||| || |||||| || | | |||||||||| ||||| |||||||||||||||| | Sbjct 1563 GAAAAGTTAATTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGA 1622 Query 57055 TACTCACCACTATACTACCGAGGATTGAA 57083 |||| ||||||||||| |||||| |||| Sbjct 1623 TACTGTCCACTATACTAACGAGGACTGAA 1651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 624 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 683 Query 57066 ATACTACCGAGGATTGAA 57083 |||||| |||||| |||| Sbjct 684 ATACTAACGAGGACTGAA 701 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 4410 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 4351 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 4350 ATACTAACGAGGA 4338 >seq50821 Length=5110 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 2098 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 2039 Query 57066 ATACTACCGAGGATTG 57081 |||||| ||||||||| Sbjct 2038 ATACTAACGAGGATTG 2023 >seq92567 Length=5447 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1988 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 1929 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 1928 TACTAACGAGGA 1917 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 3157 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 3098 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3097 TACTAACGAGGA 3086 >seq50820 Length=2672 Score = 86.0 bits (94), Expect = 7e-12 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 56998 AAAAATTTT--CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||| |||| |||| || | | |||||||||| ||||| |||||||||||||||| || Sbjct 566 AAAAGTTTTTCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGAT 625 Query 57056 ACTCACCACTATACTACCGAGGATTG 57081 ||| ||||||||||| |||||| || Sbjct 626 ACTGTCCACTATACTAACGAGGACTG 651 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 1486 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 1427 Query 57067 TACTACCGAGGATTG 57081 ||||| ||||||||| Sbjct 1426 TACTAACGAGGATTG 1412 >seq41391 Length=5293 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | |||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 2351 TTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCA 2410 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 2411 CTATACTAACGAGGA 2425 >seq111413 Length=2573 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 56992 TTTATGAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 || || || |||| | |||| || | | |||||||||| ||||| ||||||||||||| Sbjct 2137 TTGATAAAGAATTGATCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGC 2078 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 ||| ||||| ||||||||||| |||||| Sbjct 2077 GGAGATACTGTCCACTATACTAACGAGGA 2049 >seq72747 Length=21263 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 56992 TTTATGAAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 || || || |||| | |||| || | | |||||||||| ||||| ||||||||||||| Sbjct 21256 TTGATAAAGAATTGATCCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGC 21197 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 ||| ||||| ||||||||||| |||||| Sbjct 21196 GGAGATACTGTCCACTATACTAACGAGGA 21168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542309287730080