Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq97926 192 6e-44 seq44434 98.7 1e-15 >seq97926 Length=3727 Score = 192 bits (212), Expect = 6e-44 Identities = 1014/1602 (63%), Gaps = 39/1602 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| ||||||||| ||| ||||| | ||||| | |||| Sbjct 515 TACAACTTCTTTGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 574 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || | |||| || ||||| | | Sbjct 575 GTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGTCGGTCGGAATCCACGGAAAAAAT 634 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | ||| | | | || || || ||| | || ||| ||| ||| || Sbjct 635 ATTGATGAAGCCATCGAGACCTA-CA---ACCTGCTGTCAGAGAAGTGGTTCACCCACGC 690 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || |||||||| || ||| ||| ||| |||| || |||||| | Sbjct 691 CTCCCCCACTCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCT 750 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | |||| |||| |||| || |||| |||| || ||| | || || ||| Sbjct 751 CGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCAT 810 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| |||| ||||| ||||| || | |||| | | | | | | || ||| Sbjct 811 CTCCAAATCAGCGGGAGGAATTGGCGTGGCTGTCAGCTGCATCAGATCAACCGGGAGCTA 870 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| ||| ||||| |||| |||||||||||| ||||| ||||| | || | |||||| Sbjct 871 CATCGCCGGCACCAACGGCAACTCCAACGGCCTAGTCCCCATGCTGAGAGTTTACAACAA 930 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | |||| || ||||| |||||||| || | ||| || | ||||| | || || Sbjct 931 CACGGCACGTTACGTCGACCAGGGAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCT 990 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||| |||||| || ||| | ||| | || ||| || ||| || || || Sbjct 991 GGAGCCGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAAGAAAAACACAGGGAAGGA 1050 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | | || ||||||||||| ||||||| || ||| | || ||||| || ||||| | Sbjct 1051 GGAGCAAAGAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCGGACCTCTTCATGAAGAG 1110 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || || | ||| | |||| ||| | ||||| || || ||| || ||| || Sbjct 1111 AGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCGAACGAGGCTCCTGGGCTGGATGA 1170 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || || | ||||| | | || | || || | ||||| || || Sbjct 1171 GTGCTGGGGGGAGGAGTTTGAGGCGCTCTACACCAAATATGAGAAGGAGGGCCGGGTCAA 1230 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | | |||||| | || | || ||| || || || Sbjct 1231 GCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCATTATTGAGTCCCAGACAGAAACCGG 1290 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||| || ||||| ||| ||| ||| | |||| ||| |||||||||| | || || Sbjct 1291 TACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGG 1350 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||| || || || ||||| ||||| || || || || | |||||| | Sbjct 1351 CACCATCAAATGCAGCAACCTCTGCACAGAGATCGTTGAATACACCAGTGACGACGAGGT 1410 Query 94614 TGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTC 94673 || || ||||| |||| |||||| || || || | || || | ||| || Sbjct 1411 GGCGGTCTGTAATCTGGCGTCCATC--GCTCTCAACAT--GTACGTCACCCCTGAGCG-- 1464 Query 94674 TACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCT 94733 | || || | | | || | || | | | || || ||||| Sbjct 1465 ------GACCTTTGACTTTAAAAAACTGGCCTACGTGACCAAAGTAATCGTGAAAAACCT 1518 Query 94734 GAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAA 94793 ||||| | | || |||| ||||||||||| || || || || ||||| || ||| || Sbjct 1519 GAACAAGATCATTGACATCAACTTCTACCCAGTGCCCGAAGCCGAGAAGTCCAAC---AA 1575 Query 94794 GCATC---GGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGCG 94850 || || |||| ||||| ||||| ||||| || | ||||| || | | ||||||| Sbjct 1576 GCGTCACAGGCCAATCGGGATCGGTGTCCAAGGACTGGCGGATGCCTTCATCCTGATGCG 1635 Query 94851 TCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTTA 94910 | |||| || ||| || | | || | | || ||||| | ||| || Sbjct 1636 TTACCCCTTTGAAAGCCCCGAGGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTA 1695 Query 94911 TTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAAT 94969 |||| || | || ||| | | | | ||||| | | |||||| | |||| Sbjct 1696 CTACGCTTCCCTGGAGGCAAGCTG-CGATCTGGCCCGCGAGCACGGCG---CCTACGAGA 1751 Query 94970 CGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGC 95029 ||| || || || || | ||||||| | |||| ||| | |||| || || Sbjct 1752 CGTACCAAGGCTCTCCTGTCAGCAAGGGCATCCTCCAGTATGACATGTGGGAGAAGACGC 1811 Query 95030 CCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGATGTTATCAAACACGGTGTGA 95086 | | | |||| |||| ||||||| || | | | || | ||||||||| |||| Sbjct 1812 CGACAGACCTGTGGGACT-GGAAGCTGCTGAAGGAGAAGA--TCGCCAAACACGGCGTGA 1868 Query 95087 AAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACA 95146 ||| ||| | ||||||| ||||| || || ||||| || |||||||| ||||||| Sbjct 1869 GGAACAGTCTGTTGATGGCCCCGATGCCGACAGCGTCCACCGCACAGATCCTGGGCAACA 1928 Query 95147 ACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAAT 95206 ||||||| |||| ||| |||| |||| | |||| | | | || ||| |||| || | Sbjct 1929 ACGAGTCTATCGAGGCCTACACCAGCAACATCTACACCCGCAGAGTCCTCTCCGGAGAGT 1988 Query 95207 TCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACA 95266 ||| || |||| ||||| || ||| ||||| | || ||||| | || Sbjct 1989 TCCAGATCGTCAATCCTCACCTGCTCAAAGACTTGACGGAGCGAGGACTGTGGAGCGAGG 2048 Query 95267 AGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 || | |||||||| ||| | ||| | |||||| ||| | ||| Sbjct 2049 AGATGAAGAACCAGCTGAT-CGCTCACAACGGATCCATTCAG 2089 >seq44434 Length=8273 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| |||||||| || |||||| Sbjct 1408 CATGGTGTGAGGAACAGTCTGCTCATGGCCCCCATGCCCACAGCCTCCACTGCCCAGATC 1349 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||| ||||| | || ||| |||| |||| | |||| | | |||||||| Sbjct 1348 CTCGGCAACAATGAGTCCATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTC 1289 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 1288 TCAGGAGAGTTTCAGGTCAGCA 1267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493900339269520