Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq97926 241 1e-58 seq85215 86.0 6e-12 >seq97926 Length=3727 Score = 241 bits (266), Expect = 1e-58 Identities = 925/1432 (65%), Gaps = 52/1432 (4%) Strand=Plus/Minus Query 153075 TTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTTGCGGTC 153134 ||||| ||| | | || | || ||||| ||||| || || || || |||| || ||| Sbjct 1956 TTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTC 1897 Query 153135 GGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCTCGAATGTCGTCCTTCAAC 153194 ||||| |||| ||||| | |||| || |||||| || | ||||||| | Sbjct 1896 GGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGC 1837 Query 153195 GCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAACACTCCT 153254 || ||| |||||||| | | ||| ||| | ||||||||| ||||| | | || Sbjct 1836 AGCTTCCAGTCCCACAGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCC 1777 Query 153255 CGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGT-CGCGTTGGGCCAGTTCGCA 153313 ||| | ||| ||| |||| |||| ||||| | || ||||||| ||||| Sbjct 1776 TTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGC-GGGCCAGATCGCA 1718 Query 153314 GCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAGAACGGCCGC 153373 ||| ||||| || | | ||||| ||||| ||| ||| || | ||||| | || Sbjct 1717 GCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGC 1658 Query 153374 TTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACC 153433 || ||| || | || |||| ||| | ||||| || ||||| || |||| ||| Sbjct 1657 CTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACC 1598 Query 153434 GACGCCGATGGGTCGATGCTTCTCGTTG-----CTGCGCCTCGCGCTCGCTATGGGATAG 153488 || ||||| || | || || |||| || || ||| || | |||| ||| Sbjct 1597 GATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCAC----TGGG-TAG 1543 Query 153489 TGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTA--TCGCCTTAA 153546 ||| || || || ||||| ||||| ||| | ||||| || | | | | | Sbjct 1542 AAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGGCC--A 1485 Query 153547 GTTTCTCGAAATCATAGGTCATTTCGTCGACG-CGTACGCATCGATTCACGGCAATAGAC 153605 |||| | || ||| ||||| || | | ||||| || || | || || ||| Sbjct 1484 GTTTTTTAAAGTCAAAGGTCCGCTCAGGGGTGACGTAC--ATG--TTGAGAGCGATGGAC 1429 Query 153606 GCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGG 153665 |||||||||||||| ||| ||| ||| | | |||| | |||||||| | ||||||| Sbjct 1428 GCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGG 1369 Query 153666 TTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTG 153725 ||||||||||| ||| ||||| ||| ||||| ||||| || | ||||| ||||||||| Sbjct 1368 TTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 1309 Query 153726 AAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG---CAGG 153782 | |||||||||||| ||||| || || | | | |||| || ||| Sbjct 1308 TACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACT---CAATAATGGCGTGCCACAGT 1252 Query 153783 TCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGT 153839 | ||| || || ||| |||| || |||||||| |||| ||| ||| || Sbjct 1251 TGCTGAGCCTTCACCACACGCT--TGA-CCCGGCCCTCCTTCTCATATTTGGTGTAGAGC 1195 Query 153840 CGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGC 153899 ||||||||| || || |||| || | || || ||| || | |||||||||||| Sbjct 1194 GCCTCAAACTCCTCCCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGA 1135 Query 153900 GACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTAC 153959 ||||| | || | | || | |||||| || ||||| | ||| || |||| Sbjct 1134 GACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAG 1075 Query 153960 ATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGAT-TGAGCACG 154016 | ||||| | || | |||| |||||| || |||| ||||| | || || Sbjct 1074 AAAAGGTCTCTGGCTCTTTGC--TCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACT 1017 Query 154017 CTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTT 154073 | | | | || |||||| || || | ||| | ||| | ||| || | | || Sbjct 1016 C-AAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG 958 Query 154074 CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCG 154133 || ||||| ||||||| || || | |||||| | || | || |||||| | |||||| Sbjct 957 CCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCG 898 Query 154134 CTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA 154193 | | | |||||||||| ||| | ||| ||| | | ||||||| | | Sbjct 897 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCG-----GTTGATCTGATGCAGCTGA 843 Query 154194 -----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGT 154248 |||||||| || || | | || || ||| ||||| | |||||| | Sbjct 842 CAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCAT 783 Query 154249 AGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAA 154308 | ||||| |||||||| ||||| | | |||||| ||| || ||| || || Sbjct 782 AAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCC 723 Query 154309 TGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCA 154368 || ||||| || ||||| ||||| ||||| || ||| || | || || Sbjct 722 TGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCA 663 Query 154369 TGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCA 154428 | ||| || |||||||| || || |||| | ||||| || |||| || || | || Sbjct 662 GGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCA 603 Query 154429 TGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 |||||||||||||||| || ||||| ||| | || |||||||| || || Sbjct 602 TGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTA 551 >seq85215 Length=7700 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || | ||| | | | |||||||| || |||||||||||| Sbjct 6880 CCTCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6821 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| |||| | | ||| ||||| ||||| Sbjct 6820 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAGGG 6761 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || |||||||| || ||| ||| || | | ||| | |||||| | | ||| ||| Sbjct 6760 ATGCCTTCTTTATCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGACC 6701 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || || ||||| |||||||| Sbjct 6700 TCTAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495436979156640