Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq97926 141 9e-29 seq44434 86.0 6e-12 >seq97926 Length=3727 Score = 141 bits (156), Expect = 9e-29 Identities = 482/735 (66%), Gaps = 26/735 (4%) Strand=Plus/Minus Query 146065 TTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACGGC 146124 ||||| | ||| ||||| |||| ||| || | | || | |||||||||| | | | Sbjct 2001 TTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 1942 Query 146125 TCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCACC 146184 |||| ||||||||||| || || ||||| || || | || || ||||| |||| | Sbjct 1941 TCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATC 1882 Query 146185 AGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---GTAGTTTGGACCAATTC 146241 | || | ||| |||||||||||| | ||||| ||| | || || ||| | | Sbjct 1881 AACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT---CCAGTCC 1825 Query 146242 CACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCC---GCGGAAC 146298 |||| | || || || | | | |||| || || | |||| || || | Sbjct 1824 CACA---GGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCTGA-C 1769 Query 146299 AGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGG-CCAGTTCGCAGCTAGC 146357 ||| | || ||||| || || | |||| | || || |||| |||||||| || Sbjct 1768 AGGAGAGCCTTG--GTACGTCTCGTAGGCGCCGT-GCTCGCGGGCCAGATCGCAGCTTGC 1712 Query 146358 TTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCT 146416 ||||| | | |||| |||||||| |||| | ||||| || ||| ||||| Sbjct 1711 CTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGA-GCAGCTGAGCCTCGG 1653 Query 146417 CGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACA 146475 ||| || ||||| || || | || | ||||| || || || || || | |||| Sbjct 1652 GGCTTTCAAAGGGG-TAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATC 1594 Query 146476 CCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCG-CAGTGGGATAGTGGTTGCT 146534 || | || | ||| |||||| ||| | || | | || |||| ||| |||| | Sbjct 1593 CCGATTGGCCTGTGACGCTTGTTGGACTTCTCGGCTTCGGGCACTGGG-TAGAAGTTGAT 1535 Query 146535 GTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTCAGCAGGACATA 146594 ||| ||||||||||| || || ||||| | ||| |||| ||| | | Sbjct 1534 GTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAA 1475 Query 146595 GTCAAATGTTTTAGTTTTAACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACA 146654 |||||| || | | | ||||| || |||||| ||||| || |||| ||||| Sbjct 1474 GTCAAAGGTCCGC---TCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACA 1418 Query 146655 TACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTT 146714 || || |||||| | | || | || ||||| | ||||||||||||||| || Sbjct 1417 GACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTT 1358 Query 146715 GATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTA 146774 |||| |||||| ||| | ||||| || | ||||||||| ||| ||||| |||||||| Sbjct 1357 GATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTA 1298 Query 146775 CGGTCCCCCGGTTTC 146789 |||| |||||||| Sbjct 1297 CGGTGTACCGGTTTC 1283 >seq44434 Length=8273 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 2285 TACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 2344 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || ||||||||| |||||||||||||||||| ||| |||||||| Sbjct 2345 CTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTC 2394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474709911406880