Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq97926 143 2e-29 seq85215 111 1e-19 >seq97926 Length=3727 Score = 143 bits (158), Expect = 2e-29 Identities = 873/1393 (63%), Gaps = 22/1393 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || || || ||||||||| | || | | || | |||||| Sbjct 572 AAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGTCGGTCGGAATCCACGGAAAA 631 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 | || || | || | ||| || ||| | || |||| | || | ||||| ||||| Sbjct 632 AATATTGATGAAGCCATCGAGACCTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCC 691 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 |||||| | ||| ||| || || || ||||||| |||| || || ||||| Sbjct 692 TCCCCCACTCTCTTCAACGCAGGAACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTC 751 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || || ||||| || || | ||||| | || Sbjct 752 GCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATC 811 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGC 123197 ||||||| | || || || |||||| || | | | ||| ||| ||| | Sbjct 812 TCCAAATCAGCGGGAGGAATTGGCGTGGCTGTCAGCTGCATCAGATCAACCGGGAGCTAC 871 Query 123198 ATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAAC 123257 ||| ||||| |||| | | || ||| || | |||||||| |||||||||| ||| Sbjct 872 ATCGCCGGCACCAACGGCAACTCCAACGGCCTAGTCCCCATGCTGAGAGTTTACAACAAC 931 Query 123258 GCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCTA 123314 | | || ||||||||||||| ||||| | | || || | || || || || Sbjct 932 ACGGCACGTTACGTCGACCAGGGAGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTG 991 Query 123315 GAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAA 123374 || ||||||||| ||||||||| || || || | | || |||| ||| ||| Sbjct 992 GAGCCGTGGCACTTTGATGTGTTTGAGTTCTTGGAGCTGAAGAAAAACACAGGGAAGGAG 1051 Query 123375 GAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGC 123434 || | | |||| | || | || |||| | ||| | || || | || ||| | Sbjct 1052 GAGCAAAGAGCCAGAGACCTTTTCTACGGCCTGTGGATCCCGGACCTCTTCATGAAGAGA 1111 Query 123435 GTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTG-TCCCGGCTTGAGCGA 123493 || || | || | ||||| || |||||||| || || | ||| || || || Sbjct 1112 GTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCC-GAACGAGGCTCCTGGGCTGGATGA 1170 Query 123494 CGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGT 123553 | || | ||||||| | | | ||| | |||| ||| || ||| | ||| Sbjct 1171 GTGCTGGGGGGAGGAGTTTGAGGCGCTCTACACCAAATATGAGAAGGAGGGC---CGGGT 1227 Query 123554 TA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | || ||| ||| | | ||| | ||||| || | || ||||| Sbjct 1228 CAAGCGTGTGGTGAAGGCTCAGCAACTGTGGCACGCCATTATTGAGTCCCAGACAGAAAC 1287 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 ||| || ||||||||||| ||||||||||||||||||||||| | ||| ||| || | Sbjct 1288 CGGTACACCGTACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCT 1347 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||| || || ||||| || || || ||| | || || | ||||||| | || ||| | Sbjct 1348 GGGCACCATCAAATGCAGCAACCTCTGCACAGAGATCGTTGAATACACCAGTGACGACGA 1407 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGAAAACGGCG 123786 ||||| || |||||| |||| || || | || | ||| | | ||| Sbjct 1408 GGTGGCGGTCTGTAATCTGGCGTCCATCGCTCTCAACATGTACGTCACCCCTGAGCGGAC 1467 Query 123787 CTTTTAATTT-CCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAA 123845 |||| | ||| |||| | ||| | || ||| | || || || ||||||| Sbjct 1468 CTTTGACTTTAAAAAACTGGCCTACG--TGACCAAAGTAATCGTGAAAAACCTGAACAAG 1525 Query 123846 ATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGA 123905 || || || | || || || || || ||||| ||| || | ||||| Sbjct 1526 ATCATTGACATCAACTTCTACCCAGTGCCCGAAGCCGAGAAGTCCAACAAGCGTCACAGG 1585 Query 123906 CCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTAC 123965 || |||| | || | ||||| |||| || || || | || |||| || | Sbjct 1586 CCAATCGGGATCGGTGTCCAAGGACTGGCGGATGCCTTCATCCTGATGCGTTACCCCTTT 1645 Query 123966 GAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCT 124025 |||||| ||| || || |||| || | || || ||| || || || |||| | Sbjct 1646 GAAAGCCCCGAGGCTCAGCTGCTCAACATCCAGATCTTCGAGACCATCTACTACGCTTCC 1705 Query 124026 TTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGC 124085 ||||||| |||||||| || || |||||||| ||||| | ||| ||| Sbjct 1706 CTGGAGGCAAGCTGCGATCTGGCCCGCGAGCACGGCGCCTACGAGACGTACCAAGGCTCT 1765 Query 124086 CCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGG 124145 || | ||| || || | ||||| ||||||||| | || |||||| | ||||| Sbjct 1766 CCTGTCAGCAAGGGCATCCTCCAGTATGACATGTGGGAGAAGACGCCGACAGACCTGTGG 1825 Query 124146 GACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGG 124203 ||||||| | | || | | | |||| | ||||| || | ||| |||||| Sbjct 1826 GACTGGAAGCTGCTGAAGGA--GAAGATCGCCAAACACGGCGTGAGGAACAGTCTGTTGA 1883 Query 124204 TGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGC 124263 |||| |||||||| || |||| || || || | || |||||||| || ||||| Sbjct 1884 TGGCCCCGATGCCGACAGCGTCCACCGCACAGATCCTGGGCAACAACGAGTCTATCGAGG 1943 Query 124264 CGTTCACTAACAA 124276 | | ||| | ||| Sbjct 1944 CCTACACCAGCAA 1956 >seq85215 Length=7700 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| ||||| | || ||| ||||| || || || ||||| ||||| || || ||| Sbjct 6882 TTCCTCCACGGAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 6823 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || ||| ||| |||| || || || ||| | ||||| | |||||||| || | Sbjct 6822 AGAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCGAAGATCAACCTCTGCTGGTCAGGAG 6763 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGA 45291 | |||||||||||||| || || ||| |||| ||| | |||||| | ||||| Sbjct 6762 GGATGCCTTCTTTATCCTGGATCTTTGCCTTGACGTTTTCAATGGTGTCACTGGGCTCGA 6703 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || | ||| | || ||||| || || || || ||||| || ||||| Sbjct 6702 CCTCTAAAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 6654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451251394377520