Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq85800 122 1e-22 seq70431 104 3e-17 seq80746 91.5 2e-13 >seq85800 Length=16958 Score = 122 bits (134), Expect = 1e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | ||||| || || ||| || |||||||||||||| ||||||||| | Sbjct 15567 GCGGTGTTGATAATGTCGAAGCCAACGCTGCCCCCGAAGGTGCTGGGCTTCCAGTACTGC 15508 Query 8996 GGGGAGCAGATGACG-TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 |||||||||||| | ||| | || ||||| || | ||| || || ||||||| ||| | Sbjct 15507 GGGGAGCAGATGGGGTTTCCCAATAAGCCC-TTGAGGGAGAAAGGGGCCCCCATCTCCAC 15449 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| || ||||||||| | ||||| || || | | ||| | |||||| Sbjct 15448 CATGGTCTCTCCAAAGATGGCATTTTCCCTGGGTTTCTCCACCAGCAGGCCTGGGTAGAG 15389 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || ||||| || |||| ||||| | | |||| | ||||| || || ||||| || Sbjct 15388 CTCCACAGCGTCAACGTGTCCATACATCTCCTCCAGCAATGCAGCCATTTCTTTCTCTCC 15329 Query 9175 T 9175 | Sbjct 15328 T 15328 Score = 102 bits (112), Expect = 1e-16 Identities = 184/262 (70%), Gaps = 8/262 (3%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || |||||||| |||| ||||| || || | | | || ||||||| | | Sbjct 14386 CCGTCCAGCAATCTGCTTAGTAAACGACTCCACCAGGTTGTTGATGCCGTGCTCAGTTAC 14327 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGCGAAAA 9549 | || ||||| | || || |||| || || ||| || ||| ||| | ||| Sbjct 14326 TACAGAGGTGTTGAAGACAAACTGTTTATAGTTGTA-TTCTT-TCTCCTCAATGTGGAAA 14269 Query 9550 TCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTC 9609 |||||||| ||| | |||||| |||| ||||| |||||||| | || || |||||| Sbjct 14268 GAATCAGGCATCAGTGGGTGCCAGTGGTACAGGGTGTTGAACTCAGATGCAATGCGGTTC 14209 Query 9610 TGGTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGT 9667 |||||||| ||| || ||| |||||| | ||| || ||||| | |||| |||||| | Sbjct 14208 TGGTACTGGAAGCGCTGGT--TGAACAGCAGCTCAGGATCAAACTTGAGCTTGAAGTGAT 14151 Query 9668 ACCCGCTGAGTTGCTGGACATA 9689 | ||||| || ||||| || || Sbjct 14150 AGCCGCTCAGGTGCTGCACGTA 14129 >seq70431 Length=1334 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || |||| ||||| ||||| || || || | || || ||||||||||| |||||||| Sbjct 489 GTGGCGGAGTTCACTATGTCAAAGCCAACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAA 430 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| || ||||| | ||| ||||| || |||| ||| Sbjct 429 TCTGGAGAACATATAGGGTTTCCCAGAAGGCCTTTAAGGGAGAACGGGGCGCCCATCTCC 370 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | |||||||| || || ||||| || | || | | | || | || | ||| | || Sbjct 369 ACCATGCTCTCCCCAAATATGGCCCCCGCTCGTGTTCTCTCCAACATCATGCCGGGATAA 310 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | ||| | |||||| | ||| ||||| | |||| | |||| |||||||||| Sbjct 309 AATTCAAGAGCCTCAATGTCACCATATAACTCTTCAAGCTCGCGGGCTATCTCCT 255 >seq80746 Length=1457 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 8939 GTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGG 8998 ||||| ||||| | || || || || || ||||||||||| |||||||| | ||| Sbjct 498 GTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAATCTGGG 439 Query 8999 GAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATG 9058 |||||||| ||| |||| || ||||||| ||| || ||||| |||| ||| | || Sbjct 438 GAGCAGATAGGGTTTCCCATCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCTACCATA 379 Query 9059 CTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCG 9118 |||||||| || || | ||||| | | || | | || ||| | ||||| || Sbjct 378 CTCTCACCAAATATACTGCTAGGACGGGTCCTCTCCAGTAAGACGCCGGGGTAGAACTCC 319 Query 9119 ACAGCCTCGACGTCGCCATAGAG 9141 | ||| || | ||| ||||| || Sbjct 318 AAAGCATCTATGTCACCATAAAG 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722524241310800