Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq97926 150 2e-31 seq44434 104 3e-17 seq123332 91.5 2e-13 >seq97926 Length=3727 Score = 150 bits (166), Expect = 2e-31 Identities = 826/1300 (64%), Gaps = 32/1300 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | |||| ||||| |||| ||| || || ||||| Sbjct 1962 TAGATGTTGCTGGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAC 1903 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 ||||| ||||| || ||||| | || ||||| | | || || ||| Sbjct 1902 GCTGTCGGCATCGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCC 1843 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT---CCCACATATCAAACTGG 116079 || || | |||||| | || | |||| | || ||||||| ||| ||||| Sbjct 1842 TTCAGCAGCTTCCAGTCCCAC---AGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGG 1786 Query 116080 AGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCC 116139 ||||| || | | | || || || | | ||||| || | ||| | | ||| Sbjct 1785 AGGATGCCCTTGCTGACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCC 1726 Query 116140 AATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATT 116199 | ||| |||| ||||| |||| |||| || || ||||| || || | || | Sbjct 1725 AGATCGCAGCTTGCCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGC 1666 Query 116200 GCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCT 116259 || |||||| | ||||| | | ||| || || || ||||||| || ||| Sbjct 1665 AGCTGAGCCTCGGGGCTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCT 1606 Query 116260 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTT-TCGAGCGGTCTCCACGGG 116318 |||||||||| || ||||| | || | | | || ||||| ||| || ||| || Sbjct 1605 TGGACACCGATCCCGATTGGCCTGTGACGCTTGTTGGACTTCTCG-GCTTCGGGCACTGG 1547 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 || || || | || || | | | || || ||||| || || || || | | Sbjct 1546 GTAGAAGTTGATGTCAATGATCTTGTTCAGGTTTTTCACGATTACTTTGGTCACGTAGGC 1487 Query 116379 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 116438 || |||| | ||||| | || ||| |||| ||| | || ||||| || Sbjct 1486 CAGTTTTTTAAAGTCAAAGGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGA 1430 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 |||||||||||| || | ||| || | | ||||| || | || || || || | Sbjct 1429 CGCCAGATTACAGACCGCCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAG 1370 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | || |||||||||| |||| || || ||| |||| || || || || Sbjct 1369 GTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 1310 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATACAT- 116617 ||| ||||| || || || || || || || ||||||| | ||| || | ||| | | Sbjct 1309 GTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTG 1250 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || || || ||| | || ||||||| ||| || || |||||||| |||| Sbjct 1249 CTGAGCCTTCACCACACGC-TTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCT 1191 Query 116678 CAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 ||||||| || ||| |||| ||| ||||| || |||| | ||||| | |||||| Sbjct 1190 CAAACTCCTC-CCCCCAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGAC 1132 Query 116737 CA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-A 116792 || ||| | ||| || | ||||||||||||||| |||||||| || |||| | Sbjct 1131 CAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAAGAGGTCCGGGATCCACAG-GCCGTA 1076 Query 116793 GAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGT 116851 ||| || || | | | ||| || | |||| || || || |||||| || | Sbjct 1075 GAAAAGGTCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTTTTCTTCAGCTCCAAGAACT 1017 Query 116852 CCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACGA 116907 | | | ||| ||||||||| |||||||||| |||| | || || | | Sbjct 1016 CAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG- 958 Query 116908 CCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCA 116967 || |||||| || || | ||||| ||| | || | ||||| || | | || Sbjct 957 CCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCG 898 Query 116968 TCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTG 117026 | || | ||| || || || ||| | | ||| | ||||| | || Sbjct 897 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTT-GATCTGATGCAGCTGACAGC 839 Query 117027 CATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGAT 117086 || ||||| || || || | || ||||| | ||||||| | | || || | || || Sbjct 838 CACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAAT 779 Query 117087 CCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGG 117146 || ||||| ||| |||| | |||| ||||||||||| |||| || ||||| Sbjct 778 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTT 719 Query 117147 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || || ||||||||||| || || | |||||| ||||| Sbjct 718 GGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAAC 679 >seq44434 Length=8273 Score = 104 bits (114), Expect = 3e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||||||||| || | ||| ||||| |||||| Sbjct 1305 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCATTGTTGCCGAGGATCTGGGCAGTGGAG 1364 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||||||| || ||||| Sbjct 1365 GCTGTGGGCATGGGGGCCATGAGCAGACTGTT 1396 >seq123332 Length=1279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 981 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1040 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| ||||||||| ||||| | Sbjct 1041 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACAGCAGCGAAGG 1100 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 1101 CCACCACACGCTC 1113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 612486768811920