Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq97926 185 1e-41 seq44434 102 1e-16 >seq97926 Length=3727 Score = 185 bits (204), Expect = 1e-41 Identities = 578/886 (65%), Gaps = 18/886 (2%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || |||||||| ||||| | ||| | ||| || | |||| || ||||||||| | Sbjct 1389 TCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGATTCTGCTGGTTGCTC 1330 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | ||| |||| ||| ||||||| |||| |||| | ||| | || |||| || Sbjct 1329 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTGTACCGGTTTCTGTCTGGGACTCA 1270 Query 205004 AGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCAC--GTACATCCCTTGAG 205058 | |||| | ||||| || |||||| |||| |||| || | | ||| | Sbjct 1269 ATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACACGCTTGACCCGGCCCTCCTT---- 1214 Query 205059 ACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTA-CACGTCCATCAGCCCTGGA 205117 ||| ||||| ||||| |||||| |||| || || | ||| || |||||| ||| Sbjct 1213 -CTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCCCAGCAC-TCATCCAGCCCAGGA 1156 Query 205118 CATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGG 205177 | || ||||||||||||||||| || | | || ||| |||| ||| || ||| Sbjct 1155 GCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGAAGAGG 1096 Query 205178 TCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTC--TCCAAG-G 205234 || ||||||||||||||| || || || | ||| || || | || || ||| | | Sbjct 1095 TCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCT--TTGC-TCCTCCTTCCCTGTG 1039 Query 205235 TTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCC 205294 || || |||| |||| | | | || |||||||||||| | ||| ||| Sbjct 1038 TTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCACGGCTCCAGGTACATGGCG 979 Query 205295 ATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 | || || || |||||||| || |||||||| || || | | | |||| ||||| Sbjct 978 AAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACT 919 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 | |||||| || || || ||||||| | | ||||| |||| | |||| || Sbjct 918 CTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCGGTT 859 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 | || | | | || ||| ||||||| || || | | |||| ||| |||||||| Sbjct 858 GATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGATTTGGAGATGAGGGCGCAC 799 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCAC 205534 | | ||| ||| || |||||| ||||| |||||| || | | ||| |||| Sbjct 798 TGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAG 739 Query 205535 GAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 | ||||| | |||||| || |||| |||||| |||||| ||||||| |||| Sbjct 738 CTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGAAC 679 Query 205595 CGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAGCCGTGAATA 205654 | |||||| || |||||||||| | | || | || ||||| || Sbjct 678 CACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCAATATTTTTTCCGTGGATT 619 Query 205655 CCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTTCACCTTG 205714 || | | | ||||||| | ||| || |||| ||| ||| | |||| | ||| Sbjct 618 CCGACCGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTC 559 Query 205715 AGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 | ||| |||| | ||| || || || | |||| |||||| ||| Sbjct 558 AACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGG 513 Score = 102 bits (112), Expect = 1e-16 Identities = 230/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 |||||| || |||| |||||| || |||||||| || || | |||||| | | |||| | Sbjct 2011 CAGGTGAGGATTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCT 1952 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | | |||| | |||||||||||| | ||||| |||||| || || ||||| Sbjct 1951 GGTGTAGGCCTCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCAT 1892 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || |||| | ||| ||| | ||| |||| ||| || | | |||||| | Sbjct 1891 CGGGGCCATCAACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTT 1832 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||||| || | | || || |||||||||| |||| | |||||| | || Sbjct 1831 CCAGTCCCACAGGTCTGTCGGCGTCTTCTCCCACATGTCATACTGGAGGATGCCCTTGCT 1772 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAG-GCTGATCCTCTTCTGCCAGCTTGCACGAGG 204476 ||| || ||| | ||||||| || | || | | ||| ||||| | ||| | Sbjct 1771 GACAGGAGAGCCTTGGTACGTCTCGTAGGCGCCG-TGCTCGCGGGCCAGATCGCAGCTTG 1713 Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 | ||| || ||||| |||||||| |||||||| | ||| Sbjct 1712 CCTCCAGGGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTT 1670 >seq44434 Length=8273 Score = 102 bits (112), Expect = 1e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | ||||||| ||| || || || |||||||| Sbjct 755 CTTCCAACCGTAGAAGTGCATGCTGGTGAGTTTGCCATAGTTTGGCTCAGCGATGTGAAT 814 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 ||| || |||||||| ||||| ||| ||||||| |||||||| ||||| |||| | | Sbjct 815 GTTGAGGGACTGGCTCTGGTCAATG-TAGGCGCCTCGATCTGCTGCCATCTTGAGGACAG 873 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||| || || |||||||| || || Sbjct 874 TCTTCTGGGAGATTTCCCACACAGTTTT 901 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | | Sbjct 1267 TGCTGACCTGAAACTCTCCTGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCT 1326 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | ||| |||||||||| ||||| || ||| ||| ||||||||||| |||| || Sbjct 1327 CAATGGACTCATTGTTGCCGAGGATCTGGGCAGTGGAGGCTGTGGGCATGGGGGCCATGA 1386 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 1387 GCAGACTGTTCCTCACACC 1405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793832638234720