Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq85215 140 3e-28 seq123334 93.3 4e-14 seq123333 93.3 4e-14 seq92941 87.8 2e-12 >seq85215 Length=7700 Score = 140 bits (154), Expect = 3e-28 Identities = 165/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || || || || || ||||| ||||| |||||||| | || |||||| | Sbjct 6650 AAAAATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACCATCACTTTAGAGGTCGAGCC 6709 Query 38300 CACCGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 || |||| | | | ||||| | || | ||| |||| || ||||| || || || | | Sbjct 6710 CAGTGACACCATTGAAAACG-TCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCTCCTG 6768 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||| || | || | ||| || || |||||||| || | ||||||||| ||||| Sbjct 6769 ACCAGCAGAGGTTGATCTTCGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACT 6828 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||||| | || || ||| | ||||||||| Sbjct 6829 ACAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTGCGT 6869 >seq123334 Length=530 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| || |||| ||| || Sbjct 215 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAAGCCAACACATGAG 273 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | | ||| | || |||| |||||||| || |||||| ||||| | Sbjct 274 AGATGAAGTACCTCTCCTCATCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTCGACAGAT 333 Query 133394 CCACCT 133399 |||||| Sbjct 334 CCACCT 339 >seq123333 Length=523 Score = 93.3 bits (102), Expect = 4e-14 Identities = 97/126 (77%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || ||||||||||||||||||||||||||||| || |||| ||| || Sbjct 376 GCTC-ACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAAGCCAACACATGAG 434 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | | ||| | || |||| |||||||| || |||||| ||||| | Sbjct 435 AGATGAAGTACCTCTCCTCATCCTTCAGAGACTCCCAGTGCTGCAGGTCCTTCGACAGAT 494 Query 133394 CCACCT 133399 |||||| Sbjct 495 CCACCT 500 >seq92941 Length=5299 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||| || | || | ||| ||||| |||||||| || | ||||||||| |||| Sbjct 5294 GACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGAC 5235 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| ||||| | || || ||| | || |||||| |||| || || Sbjct 5234 TACAACATCCAGAAGGAGTCTACCCTCCATCTTGTCCTGCGTCTGAGGGGTGG 5182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499340875086080