Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq78724 165 6e-35 seq32483 147 2e-29 seq61900 107 1e-17 seq49244 89.7 4e-12 >seq78724 Length=7557 Score = 165 bits (182), Expect = 6e-35 Identities = 923/1459 (63%), Gaps = 20/1459 (1%) Strand=Plus/Plus Query 517264 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 517323 ||| || | ||| || ||||| || | || || ||||| || || || |||||||||| Sbjct 3613 CACGTTCAAAATGCCGTTGGCGTCAATGTCGAAGGTGACCTCGATCTGTGGGACCCCTCG 3672 Query 517324 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 517383 |||||||||||| ||| || | ||| | ||||| ||| || ||||| || | Sbjct 3673 AGGAGCAGGTGGGAGTCCTGTCAGCTCAAACTTGCCCAGCAGATTGTTGTCTTTGGTCAT 3732 Query 517384 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 517443 || || || ||| | | |||||| || | | || || || || || || || Sbjct 3733 GGCTCTCTCCCCTTCGTAGACTTGGATGAGGACCCCGGGCTGGTTGTCAGAGTAGGTGGT 3792 Query 517444 AAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 517502 || ||||| ||| |||| || || || ||||| | | ||| | ||||| | Sbjct 3793 GAAGG-TCTGGGTTTGTTTAGTGGGGATGGTGGTGTTGCGTTTAATCAGGGATGTCATGA 3851 Query 517503 TACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 517562 || || ||||| || | ||| || || ||||| | ||||| | || | | || | Sbjct 3852 CTCCTCCGGCTGTCTCGATACCCAGGGACAGAGGCGCCACATCCAGCAGCAGCAGATCCT 3911 Query 517563 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 517622 ||| || | || | ||| ||||| || || || | || ||||| || || | Sbjct 3912 GAACGTTGCCTGAGGTATCACCTGAGAGAATGGCGGCCTGGACGGCGGCACCGTAAGCCA 3971 Query 517623 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAA 517682 | || || || || || | | | || || | | |||||||| |||| || | Sbjct 3972 CCGCCTCGTCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCATTGAAGAAATCCTGCAGGA 4031 Query 517683 GTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 517741 ||| ||| | || || || |||| || |||||||| | || || || || | |||| Sbjct 4032 GTT-TCTGGATTTTGGGGATTCGAGTGGAGCCTCCAACCAGGACGATGTCGTGAATCTGT 4090 Query 517742 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAAAC 517801 || |||| ||| | |||| | |||| || || || || | | || ||| Sbjct 4091 CCCTTGTCCATTTTGGCATCCCTCAGGGCTTTCTCCACTGGCTCTAATGTTCCCCTGAAC 4150 Query 517802 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 517859 | ||| || || || || ||||| ||| || || || || | || || |||| | Sbjct 4151 AGGTCAGAGCACAGCTCCTCGAAGCGAGCCCTGGT--GATGGAGGTGTAGAAGTCAACAC 4208 Query 517860 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 517919 | || |||| ||| || | ||||| | | || | || || || | | || | Sbjct 4209 CCTCAAACAGAGAGTCGATCTCAATGCTGGCCTGGGAGCTGGAGGACAGGGTTCTCTTGG 4268 Query 517920 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGAT-TGATTCAAATCTGTT 517978 | | ||||| ||||| | || || | || ||| | || | ||| | | || | Sbjct 4269 CCCTCTCACAAGCTGTGCGCAGCCTCCTCAATGCTCTCT-TGTTATGACTGATGTCCTTC 4327 Query 517979 TTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTT 518036 || | ||| |||||||| || || ||| | ||| | || | || || ||||| |||| Sbjct 4328 TTGTGTTTCCTCTTGAACTCCTCCACAAA--ATGGTTGACCATGCGGTTGTCAAAGTCTT 4385 Query 518037 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 518096 | || |||| | ||| | ||| | || ||| | || | || | || ||||| | | Sbjct 4386 CTCCACCCAGGTGAGTGTCTCCAGCTGTGGCTTTGACCTCAAAGATACCGTCTTCGATTG 4445 Query 518097 ACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTT 518156 || | | || ||| ||| || || |||| ||||| || || || || |||| Sbjct 4446 TCAGGATGGACACGTCAAAGGTGCCTCCGCCCAGGTCAAAGATCAGGACGTTACGTTCTG 4505 Query 518157 -TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 || |||| ||| || ||||| || |||| ||||| || || || || || || || Sbjct 4506 CTGACTTGCCTTTG-TCCAGACCGTATGCAATGGCAGCTGCTGTGGGCTCGTTGATGATC 4564 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 |||| ||||| || || || || ||||| ||||||||||| || | ||||| ||| Sbjct 4565 CTCAGGACATTCAGTCCTGCGATGACGCCTGCGTCTTTAGTGGCCTGACGCTGTGAGTCG 4624 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 || || ||||| || || ||||| || || | | || || || | || || Sbjct 4625 TTGAAGTATGCTGGGACTGTAATGACTGCGTTGGACACCGTTTGGCCGAGGTAGGCCTCA 4684 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG--GAATATTGCT 518393 || | | ||||| || | | ||| || || | | || ||| ||| || | Sbjct 4685 GCAATCTCCTTCATCTTCACCAGGACCATGGAGGAGACCTCCTCAGGGTTGAAGGTT--T 4742 Query 518394 TGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAA 518453 || || || ||| |||| || | ||| || ||| | | || || | Sbjct 4743 TGTTCTCCCCTTTGTATTCCACTTGAATTTTTGGCTTCCCTCCATCTCCGACCACCTTGA 4802 Query 518454 ATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATC 518513 | ||||||| ||||| |||| || || | | |||| ||| | ||| ||||| | || Sbjct 4803 AGGGCCAGTGCTTCATGTCTGCCTGCACCACTGGCTCATCAAACTTTCTTCCAATCAGTC 4862 Query 518514 GTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTC 518573 |||| |||||||| | ||| ||| | ||||| | || | || | |||||||| || | Sbjct 4863 GTTTGGCATCAAATACAGTGTTGCTGGGATTCAAAGCCACCTGGTTCTTGGCTGCGTCCC 4922 Query 518574 CAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGAT 518633 | ||||| ||||| || || || | ||||| || || || | || || || | Sbjct 4923 CGATCAGCCTCTCTGTGTCCGTGAACGCCACATAGCTGGGGGTGGTCCTGTTGCCCTGGT 4982 Query 518634 CATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTC 518693 |||| || || ||||| ||||| |||| || | || || ||||| | || || | Sbjct 4983 CATTGGCGATGATTTCTACTTTTCCATGCTGGAAAACCCCCACACAGGAGTAGGTGGTAC 5042 Query 518694 CTAAATCAATACCAATAGC 518712 | | ||||| || ||||| Sbjct 5043 CCAGGTCAATGCCGATAGC 5061 >seq32483 Length=14385 Score = 147 bits (162), Expect = 2e-29 Identities = 428/657 (65%), Gaps = 2/657 (0%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| || || || || | | || | ||||| || | | | || | |||| Sbjct 13282 TTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGCGGTGGATTTCACCTCAAAAATG 13341 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| || || | | || ||| ||| || || || | ||||| || ||| Sbjct 13342 CCATCCTCAATAGTCAGGATGGACACGTCAAAGGTGCCTCCGCCGAGGTCAAAGATCAGT 13401 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 ||||| ||| || |||||| | ||| || || | || || || || || Sbjct 13402 ACATTGCGCTCTCCCCTTTTACCTTTATCTAAACCGTAAGCGATGGCTGCTGCTGTCGGC 13461 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| || || |||| || ||| || |||| || || ||||| || ||||||||| Sbjct 13462 TCATTGATGATCCTCAGAATATTCAGCCCAGAGATCACCCCAGCATCCTTGGTGGCTTGT 13521 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTACC 518322 || || || || || ||||| || ||||| || || || || | | || ||| | || Sbjct 13522 CTCTGAGAGTCATTGAAATAAGCTGGAACTGTGATGACTGCGTTGGACACCCTCTGTCCC 13581 Query 518323 AATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGG 518382 | || || || | | ||||||||| | | ||| || || |||| ||||| Sbjct 13582 AGG-TAGGCCTCAGCAATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCCTCTGG 13640 Query 518383 GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATT 518442 | | ||||| ||| || ||| || | | | ||| || | | || | Sbjct 13641 ATAGAAGGCCTTGGTCTCACCTTTATACTCCACCTGGACTTTTGGCTTTCCATTATCACT 13700 Query 518443 AATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCT 518502 || || || || |||||| ||||| || | || ||| | ||| ||||| | ||| Sbjct 13701 GATCACCTTGAAAGGCCAGAGCTTCATGTCAGCCTGGACAACTGCGTCGTTAAACTTTCT 13760 Query 518503 ACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT 518562 || || | | ||| |||||||| || || |||||||| || || || | || | || Sbjct 13761 TCCGATGAGCCTTTTGGCATCAAAGATTGTGTTGGTTGGGTTCATAGCCACCTGGTTCTT 13820 Query 518563 GGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCG 518622 ||| ||||||||||| || ||||| || ||||| | ||||| ||||| || | Sbjct 13821 GGCAGCATCTCCAATGAGCCTCTCTGTGTCNGTAAAGGCCACATAGCTGGGAGTGGTCCT 13880 Query 518623 ATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 518679 || || |||||||| |||||||| || ||||| |||| || | || || ||||| Sbjct 13881 GTTGCCCTGATCATTGGCAATAATCTCCACTTTGCCATGCTGGAAAACCCCAACACA 13937 >seq61900 Length=14013 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| || |||||||| || || || || || | ||| ||| Sbjct 5898 TTTTTGTCTAGGCCATATGCAATGGCTGCAGCAGTGGGCTCGTTGATGATGCGCAACACA 5839 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||| ||| | || |||||||| |||||||| | || || ||||| || || Sbjct 5838 TTTAGCCCAGAAATGGTCCCAGCATCTTTGGTGGCTTGACGCTGAGAGTCGTTGAAGTAA 5779 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||||||||| ||||| |||| Sbjct 5778 GCAGGAACAGTGATAACTGCAT 5757 Score = 91.5 bits (100), Expect = 1e-12 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||| ||||| ||||||||||| | ||||| || |||||||| ||||||||| Sbjct 7537 GCAGACACATTGAGAATGCCATTGGCATCAATGTCAAAGGTCACTTCAATCTGAGGGACC 7478 Query 517319 CCTCTCTGAGCAGGTGGGATCCC 517341 ||||| |||||||||| || || Sbjct 7477 CCTCTGGGAGCAGGTGGAATACC 7455 >seq49244 Length=18477 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||||||| || || ||||| | | ||| Sbjct 15137 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTTGGCTCGTTGATAATACGAAGGACA 15078 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| || | || | || |||||||| ||||| || | || || || || || || Sbjct 15077 TTAAGTCCCGAGATAGTCCCCGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 15018 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||||| || || | || |||| ||||| Sbjct 15017 GCAGGCACGGTTACTACAGCATTTGTTAC 14989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3774219425253772