Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq97926 206 3e-48 seq44434 96.9 4e-15 >seq97926 Length=3727 Score = 206 bits (228), Expect = 3e-48 Identities = 929/1445 (64%), Gaps = 58/1445 (4%) Strand=Plus/Minus Query 105896 TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGT 105955 ||||| ||| |||||||| | |||| ||| | |||||||| | ||||||| Sbjct 2001 TTGACGATCTGGAACTCTCCGGAGAGGACTCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 1942 Query 105956 TCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATC 106015 || | | || || || |||| ||| ||||||||||| ||||| ||||| || |||||| Sbjct 1941 TCGATAGACTCGTTGTTGCCCAGGATCTGTGCGGTGGACGCTGTCGGCATCGGGGCCATC 1882 Query 106016 AAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA- 106074 || |||||||| | | || | || ||| ||||| || | | |||||| | Sbjct 1881 AACAGACTGTTCCTCACGCCGTGTTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCAC 1822 Query 106075 -GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCAC-CCCTTGG-GACGTGGG 106131 | | | | || || || ||||||| ||| | || || | |||||| ||| || Sbjct 1821 AGGTCTG-TCGGCGTCTTCT-CCCACATGTCATACTGGAGGATGCCCTTGCTGACA--GG 1766 Query 106132 AGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 106191 ||| || | | ||||| |||| || || | |||| || ||||| |||||||| Sbjct 1765 AGAGCCTTGGTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCAGCTTGCCTCCAG 1706 Query 106192 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 106251 ||| |||| || ||||| || ||||| | || | | || || || || Sbjct 1705 GGAAGCGTAGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTC 1646 Query 106252 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 106311 ||| | ||| || || || || ||||||| || ||||| ||||| | || || || Sbjct 1645 AAAGGGGTAACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGG 1586 Query 106312 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGA 106370 ||||| ||| | || ||||| | || || || || || || || ||||||||| Sbjct 1585 CCTGTGACGCTTGTTGGACTT-CTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGA 1527 Query 106371 CTCGGTTTAGATTTTTGGTAACAAT--CTTTG-TGATTTCATGAAGTTTTTCATAATCAA 106427 ||| || ||||| || || ||||| | | | ||||||| | | |||| Sbjct 1526 TCTTGTTCAGGTTTTTC---ACGATTACTTTGGTCACGTAGGCCAGTTTTTTAAAGTCAA 1470 Query 106428 AAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAG 106487 | || || ||| |||| ||| | || ||||| || |||| ||| || || | Sbjct 1469 AGGTCCG---CTCAGGGGTGACGTACATGTTGAGAGCGATGGACGCCAGATTACAGACCG 1413 Query 106488 CCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCG 106547 || ||| || | | ||||| || | || ||||| || | |||| | || || | Sbjct 1412 CCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGG 1353 Query 106548 TCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCG 106607 | |||| ||||| ||||| ||||| ||||||| || || ||||| |||||||| || | Sbjct 1352 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTG 1293 Query 106608 TCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATG 106666 | || || || ||||| |||| | ||| || | ||||| | | | | || || Sbjct 1292 TACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTGCTGAGCCTTCACCACAC 1233 Query 106667 GCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACC 106726 || ||| |||| |||||| ||| || || |||||||| || ||||||||||| ||| | Sbjct 1232 GC-TTGACCCGGCCCTCCTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTC-CCCCCA 1175 Query 106727 GC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCCTC 106782 || || || || || |||| || ||||| | |||||||| ||| | || Sbjct 1174 GCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTTTC 1115 Query 106783 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCG 106842 | || | ||||||||| ||||| || ||||||||| | || || ||||| | Sbjct 1114 C---ACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCT 1058 Query 106843 AGCCTCTTCGTCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCC 106901 ||| || | ||| ||| || | | ||| | |||||| | | ||| ||||| Sbjct 1057 TTGCTCCTCCTTCCCTGTGTT-TTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCC 999 Query 106902 ATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAG 106957 | ||||| || || | |||| | ||| || | | | || | || | || || Sbjct 998 ACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG-CCTCCCTGGTCGACGTAA 940 Query 106958 CGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTC 107017 || || ||| ||| | || | ||||| || | | || | || | || || || Sbjct 939 CGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTG 880 Query 107018 CCCCGAATACGAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAAT 107067 || | ||| || |||| | | | ||| | || || ||||| Sbjct 879 CC-------GGCGATGTA---GCTCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAAT 830 Query 107068 ACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGAT 107127 || || || | || ||||| | || |||| | | || || |||| || || | ||| Sbjct 829 TCCTCCCGCTGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGAT 770 Query 107128 TGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGC 107187 ||| ||||| |||||| |||||||| ||||||| ||| || || || || || Sbjct 769 GCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGC 710 Query 107188 ATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCT 107246 |||||||| || || | ||||| ||||| || | | |||| | || ||| |||| Sbjct 709 GTTGAAGAGAGTGGGGGAGGCGTGGGTGAAC-CACTTCTCTGACAGCAGGTTGTAGGTCT 651 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | | | |||||| | || |||||||| |||| | ||| | ||| | ||||| | Sbjct 650 CGATGGCTTCATCAATATTTTTTCCGTGGATTCCGACCGACACTCTCATGAGCATGTGCT 591 Query 107307 GGGGT 107311 | ||| Sbjct 590 GCGGT 586 >seq44434 Length=8273 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| || ||||| || | ||| || || || |||| ||||| || Sbjct 2281 TGTGTACTCTACGATCTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 2340 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| |||||| ||||||| || ||||||||||||||||| || || || || || ||||| Sbjct 2341 GTTGCTCTTTCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGTGTGCCGGTTTCTGTCTG 2400 Query 106624 TGACTTGA 106631 ||||| || Sbjct 2401 TGACTCGA 2408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588999499684880