Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq32483 136 3e-26 seq49244 113 4e-19 seq61900 104 2e-16 seq2471 100 2e-15 seq2470 100 2e-15 >seq32483 Length=14385 Score = 136 bits (150), Expect = 3e-26 Identities = 384/584 (66%), Gaps = 12/584 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| || |||||||| |||| || |||| ||||| Sbjct 13967 ATTGGCATCGATCTGGGCACCACCTACTCCTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 13908 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || ||||||||||||||||| || ||||| || ||||| ||||| | || || || Sbjct 13907 GAGATTATTGCCAATGATCAGGGCAACAGGACCACTCCCAGCTATGTGGCCTTTACNGAC 13848 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 || || | |||| ||||| || || | || | || || || ||||| || Sbjct 13847 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTGGCTATGAACCCAACCAACACA 13788 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 || |||||||| ||| | | || ||||||| ||||| || | ||| ||||| || Sbjct 13787 ATCTTTGATGCCAAAAGGCTCATCGGAAGAAAGTTTAACGACGCAGTTGTCCAGGCTGAC 13728 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT--A 550292 ||||||| ||||||||| | | | | || | |||||| || | | | || | | Sbjct 13727 ATGAAGCTCTGGCCTTTCAAGGTGATCAGTGATAATGGAAAGCC-AAAAGTCCAGGTGGA 13669 Query 550293 CTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGTTTTA 550348 | || |||| || | ||| || | ||||| |||| || || ||||| | Sbjct 13668 GT-ATAAAGG---TG-AGACCAAGGCCTTCTATCCAGAGGAAATCTCCTCCATGGTCCTG 13614 Query 550349 ATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATA 550408 | |||||||| | | || || | | || || || | | ||||| || Sbjct 13613 GTTAAAATGAAGGAGATTGCTGAGGCCTACCTGGGACAGAGGGTGTCCAACGCAGTCATC 13554 Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| ||||| |||||||| || | ||||| || || |||||||| || Sbjct 13553 ACAGTTCCAGCTTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATC 13494 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||| || ||| |||| | || |||||||| || || || || || | || || || Sbjct 13493 TCTGGGCTGAATATTCTGAGGATCATCAATGAGCCGACAGCAGCAGCCATCGCTTACGGT 13434 Query 550529 CTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA 550572 | |||||| ||| ||| | |||||||| |||||||| Sbjct 13433 TTAGATAAAGGTAAAAGGGGAGAGCGCAATGTACTGATCTTTGA 13390 Score = 131 bits (144), Expect = 1e-24 Identities = 438/679 (65%), Gaps = 2/679 (0%) Strand=Plus/Minus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| || ||||| ||| || | || || || | || || ||| |||| | Sbjct 13193 ACAGCTTGTGAGAGAGCGAAAAGAACCCTGTCCTCCAGCACCCAGGCCAGCCTTGAGATT 13134 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || | |||||||| || || | | || | || | ||||| ||||| || Sbjct 13133 GACTCTCTCTTTGAGGGCATCGACTTCTACACCTCCATCACAAGGGCACGCTTTGAGGAG 13074 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | ||||| || || || |||| | || ||||| || | | | |||| | Sbjct 13073 CTCAACTCTGAGCTTTTCAGGGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCC 13014 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | ||||| ||||| | || || || || || |||||||| || ||||||||||| Sbjct 13013 AAGCTGGATAAGTCCAAGATCCACGAGATCGTCCTGGTTGGTGGCTCCACAAGAATTCCC 12954 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || ||| ||| ||||||| | | | || | || | || Sbjct 12953 AAAATCCAGAAGCTCTTGCAGGACTTCTTT-AATGGTAGAGAGCTGAACAAGAGCATCAA 12895 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 |||||||| || || || || || || ||| | || || || || || || | || Sbjct 12894 CCCAGATGAAGCAGTGGCATACGGGGCAGCAGTCCAGGCTGCAATCCTCATGGGTGACAC 12835 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | || || | || || | | || | || || |||| || ||||| ||| | || Sbjct 12834 TTCAGAGAATGTCCAGGATCTGCTGCTGCTGGACGTGGCTCCGCTGTCTCTGGGTATTGA 12775 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || | || || ||||||| ||| ||| | | || || || || || || | Sbjct 12774 GACTGCAGGTGGAGTTATGACACCTCTAATCAAACGCAACACCACCATCCCCACCAAGCA 12715 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | || || || || |||||||| || | | || ||||| ||||||| Sbjct 12714 GACCCAGATCTTCTCCACATACTCAGATAACCAGCCAGGCGTCCTGATTCAGGTTTTTGA 12655 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 ||| || ||| | || || || || || | || || | ||| | | ||||| Sbjct 12654 AGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAGTTTGAGCTCTCGGGTAT 12595 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 ||||||||||| ||||| ||||| || | || || ||||| || |||||||||||||| Sbjct 12594 CCCTCCTGCTCCCCGTGGTGTACCACAGGTGGAGGTGACTTTTGACATCGATGCCAATGG 12535 Query 552572 AATTTTGAATGTGACTGCT 552590 ||| |||||||| | ||| Sbjct 12534 CATTCTGAATGTGTCCGCT 12516 >seq49244 Length=18477 Score = 113 bits (124), Expect = 4e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| |||| || || || || || |||||||| || || || || || ||||||| Sbjct 14996 ATGCTGTAGTAACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 15055 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| | ||||||||||| |||||||||||||| || || ||||||||||| Sbjct 15056 CGGGGACTATCTCGGGACTTAATGTCCTTCGTATTATCAACGAGCCAACTGCTGCTGCTA 15115 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 15116 TTGCTTATGGCCTGGACAAA 15135 >seq61900 Length=14013 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || ||||| || || || || || ||||| || |||||||| || ||||||| Sbjct 5757 ATGCAGTTATCACTGTTCCTGCTTACTTCAACGACTCTCAGCGTCAAGCCACCAAAGATG 5816 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| ||| |||| || ||||| | || || ||||| || || |||||||| || Sbjct 5817 CTGGGACCATTTCTGGGCTAAATGTGTTGCGCATCATCAACGAGCCCACTGCTGCAGCCA 5876 Query 550518 TTGCATATGGACTTGATAAA 550537 |||||||||| || || ||| Sbjct 5877 TTGCATATGGCCTAGACAAA 5896 >seq2471 Length=18658 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || |||||||| ||||| || |||||||| ||||||||||| || || |||| Sbjct 18440 ATGCCGTTATCACTGTACCTGCATACTTCAATGACTCGCAACGTCAAGCAACCAAGGATG 18499 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||| |||| || ||||| | | || || ||||| || ||||| || || Sbjct 18500 CTGGAACTATCTCTGGTCTAAATGTGTTGAGAATCATTAATGAGCCCACTGCAGCAGCTA 18559 Query 550518 TTGCATATGGACTTG 550532 |||| ||||| |||| Sbjct 18560 TTGCTTATGG-CTTG 18573 >seq2470 Length=715 Score = 100 bits (110), Expect = 2e-15 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || ||||| || || || || ||||| || || || || ||||| |||| Sbjct 274 ATGCTGTAATTACGGTACCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACTAAGGATG 215 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || | || || |||||||| ||||| ||||||||||| || |||||||| Sbjct 214 CTGGCACCATCTCGGGCCTCAATGTTCTGCGTATCATCAATGAACCAACCGCTGCTGCCA 155 Query 550518 TTGCATATGG 550527 | |||||||| Sbjct 154 TCGCATATGG 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4022259081330380