Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq97926 324 3e-83 seq123332 125 1e-23 seq44434 91.5 3e-13 >seq97926 Length=3727 Score = 324 bits (358), Expect = 3e-83 Identities = 851/1283 (66%), Gaps = 32/1283 (2%) Strand=Plus/Minus Query 221371 GTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGCGTC-AGGGCAGCGT 221429 ||||| |||||||| |||| | |||| | |||| | ||| || |||| ||||| Sbjct 1756 GTACGTCTCGTAGGCGCCGTGCTCGCGGGCCAGATCGCA-GCTTGCCTCCAGGGAAGCGT 1698 Query 221430 GGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTGAAGGGCA 221489 |||||||||||| |||||| ||||||| || |||||||| ||||| Sbjct 1697 AGTAGATGGTCTCGAAGATCTGGATGTTGAGCAGCTGAGCCTCGGGGCTTTCAAAGGGGT 1638 Query 221490 TACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTC 221549 ||||| || ||| | || |||||||| || || ||||| ||||| |||||||| | Sbjct 1637 AACGCATCAGGATGAAGGCATCCGCCAGTCCTTGGACACCGATCCCGATTGGCCTGTGAC 1578 Query 221550 TCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGA 221609 | ||||||| | ||||| ||||| || || ||||||| ||| || | ||||| | Sbjct 1577 GCTTGTTGGACTTCTCGGCTTCGGGCACTGGGTAGAAGTTGATGTCAATGATCTTGTTCA 1518 Query 221610 GGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGC 221669 |||| ||| ||||| ||| | || ||| || || || ||| | Sbjct 1517 GGTTTTTCACGATTACTTTGGTCACGTAGGCCAGTTT-------TTTAAAGTCAAAGGTC 1465 Query 221670 CGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGG 221729 ||| || |||||| | | | | || || || | | ||||| ||||| || | Sbjct 1464 CGC--TC----AGGGGTGACGTACATG--TTGAGAGCGATGGACGCCAGATTACAGACCG 1413 Query 221730 CCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGG 221789 |||||||||| | |||| || | | ||||||||| |||||||||||||| ||||||| Sbjct 1412 CCACCTCGTCGTCACTGGTGTATTCAACGATCTCTGTGCAGAGGTTGCTGCATTTGATGG 1353 Query 221790 TCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGAC 221849 | ||||| | | || || ||| | ||| ||||| ||||| ||||| | || Sbjct 1352 TGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTACGGTG 1293 Query 221850 CGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCGCTCACCGTC 221908 || || || ||| | | | | ||| || ||| |||| ||| || ||||| Sbjct 1292 TACCGGTTTCTGTCTGGGACTCAATAATGGCGTGCCACAGTTG-CTGAGCCTTCACCACA 1234 Query 221909 CTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAAACTTTTCACCG 221968 | |||||| ||||| ||| ||||| ||| |||||| ||||||| || || Sbjct 1233 CGCTTGACCCGGCCCTC---CTTCTCATATTTGGTGTAGAGCGCCTCAAACTCCTCCCCC 1177 Query 221969 TACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCT 222028 | ||| ||||| || ||| | | |||||||||||| ||||| | |||| | Sbjct 1176 CAGCACTCATCCAGCCCAGGAGCCTCGTTCGGACACATCAGAGACCAGTCTTGGTTGCTT 1117 Query 222029 TTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGC 222088 | || |||| |||||||||||||||||||||||| | | || || ||||||| | Sbjct 1116 TCCACTCTCTTCATGAAGAGGTCCGGGATCCACAGGCCGTAGAAAAGGTCTCTGGCTCTT 1057 Query 222089 TGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCAC 222148 ||||||||| || |||||||| |||| ||||| |||||||| | ||| ||||||| Sbjct 1056 TGCTCCTCCTTCCCTGTGTTTTTCTTCAGCTCCAAGAACTCAAACACATCAAAGTGCCAC 997 Query 222149 GGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTC 222208 |||||||| || | ||| | || ||||||| ||||||||| ||||| || || | Sbjct 996 GGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCTCCCTGGTCGACGTAACGT 937 Query 222209 TCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCC 222268 || |||| | | | || | || || || |||||||| ||||||||||| Sbjct 936 GCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAGGCCGTTGGAGTTGCCGTTGGTGCCG 877 Query 222269 TTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATACCACCGGCGTGT 222328 ||||| ||| | || | | ||| ||| || ||| || || || || | Sbjct 876 GCGATGTAGCTCCCGGTTGATCTGATGCAGCTGACAGCCACGCCAATTCCTCCCGCTGAT 817 Query 222329 TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTG 222388 || ||||| | |||||| ||| || ||||| ||||| || || ||| ||||| Sbjct 816 TTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTC 757 Query 222389 ACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTG 222448 | | ||||| || || |||| ||||| || ||| | ||||| || || ||| Sbjct 756 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTTCCTGCGTTGAAGAGAGTG 697 Query 222449 GGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCG 222508 || |||||| || || | | |||| ||| | ||| ||||| | | || | Sbjct 696 GGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTAGGTCTCGATGGCTTCATCA 637 Query 222509 ATGTTGTCCCCGT-GAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCT---C 222564 || || | |||| || || | | | | ||||||| ||||| ||| || | || | Sbjct 636 ATATTTTTTCCGTGGATTCCGACCGACAC-TCTCATGAGCATGTGCTGCGGTCGCTCGGC 578 Query 222565 CACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTA 222624 ||| || || || || | |||||| || |||||||||||||| |||||| | Sbjct 577 CACTTTGCCGTT-GATCT--TCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAA 521 Query 222625 GTTG-AGGTCAAAGTCTCTGCCG 222646 |||| ||| ||| |||||| || Sbjct 520 GTTGTAGGAGAAA-TCTCTGTCG 499 >seq123332 Length=1279 Score = 125 bits (138), Expect = 1e-23 Identities = 119/150 (79%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| ||||| |||||||||||||| ||||| ||| ||||| || || Sbjct 1116 GGAGAGCGTGTGGTGGCCTTCGCTGCTGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCT 1057 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 1056 GCCATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 997 Query 25993 ATCAGCAGGGACGAGG---GTC-TCCACAG 26018 |||||||| || |||| ||| ||||||| Sbjct 996 ATCAGCAGAGATGAGGTGAGTCTTCCACAG 967 >seq44434 Length=8273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| |||||||| ||||||||||| || || || ||||||| || ||||||||| Sbjct 2784 CATAAAGAGGTCTGGGATCCACAGTGCGAAGAACAGGTCTCTGGCCCTCTGCTCCTCTTT 2843 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 || |||||||| ||| ||||| || ||||| | || | |||||||||||||| || Sbjct 2844 ACCTGTGTTTTTCTTCAACTCCAAGAAGTCAAACACATCGGAATGCCACGGCTCCAGGTA 2903 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || || |||| || Sbjct 2904 CACAGCGAAGGCCCCAGGTCTCT 2926 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 ||||||||||| ||||||||||||||||||| ||||||| || |||||| | Sbjct 1759 CAGGGCAGCGTAGTAGATGGTCTCAAAGATCTGGATGTTGAGCAGCTGGGCCTCCTGGCT 1818 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||| || ||||| | |||| |||| ||||| ||||| |||||||| || || Sbjct 1819 TTCGAATGGGTAACGCATAAGAATAAAGGCGTCAGCCAGACCCTGCACTCCGATTCCAAT 1878 Query 221539 GGGCCTGTGTCTCCTGTTGGA 221559 |||||||| | | |||| || Sbjct 1879 TGGCCTGTGGCGCTTGTTTGA 1899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927299875665280