Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq32483 138 7e-27 seq61900 114 8e-20 seq2471 107 1e-17 seq78908 93.3 3e-13 seq49244 93.3 3e-13 seq78724 89.7 3e-12 >seq32483 Length=14385 Score = 138 bits (152), Expect = 7e-27 Identities = 360/545 (66%), Gaps = 6/545 (1%) Strand=Plus/Minus Query 474332 ATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTA 474391 ||||| || ||| | || || || ||| ||||| | |||| || |||| ||||| Sbjct 13967 ATTGGCATCGATCTGGGCACCACCTACTCCTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 13908 Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 || || ||||||||||| || || || || || || || ||||| | ||||| || Sbjct 13907 GAGATTATTGCCAATGATCAGGGCAACAGGACCACTCCCAGCTATGTGGCCTTTACNGAC 13848 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || || |||||||||||||| || | || | || || || || || Sbjct 13847 ACAGAGAGGCTCATTGGAGATGCTGCCAAGAACCAGGTGGCTATGAACCCAACCAACACA 13788 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 || |||||||| ||||| | || || | || ||| | || | |||||| |||| Sbjct 13787 ATCTTTGATGCCAAAAGGCTCATCGGAAGAAAGTTTAACGACGCAGTTGTCCAGGCTGAC 13728 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA--TATAGAAGCAA 474629 ||| | |||||||| |||||||| | || | ||| || ||| | | || | | Sbjct 13727 ATGAAGCTCTGGCCTTTCAAGGTGATCAGTGATAATGGAAAGCCAAAAGTCCAGGTGGAG 13668 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 || | |||||| || || || | || || |||| || || ||||| | | | Sbjct 13667 TATA--AAGGTGAGACCAAGGCCTTCTATCCAGAGGAAATCTCCTCCATGGTCCTGGTTA 13610 Query 474690 AAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACT 474748 ||||||| | | || ||| | || || ||||| || | | ||||| || || Sbjct 13609 AAATGAAGGAGATTGCTGAG-GCCTACCTGGGACAGAGGGTGTCCAACGCAGTCATCACA 13551 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 |||||||| ||||| ||||| ||||| | ||||| || || ||||| || || | Sbjct 13550 GTTCCAGCTTATTTCAATGACTCTCAGAGACAAGCCACCAAGGATGCTGGGGTGATCTCT 13491 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 || || ||| || | | || || ||||| || |||||||| || | ||||| ||| | Sbjct 13490 GGGCTGAATATTCTGAGGATCATCAATGAGCCGACAGCAGCAGCCATCGCTTACGGTTTA 13431 Query 474869 GATAA 474873 ||||| Sbjct 13430 GATAA 13426 >seq61900 Length=14013 Score = 114 bits (126), Expect = 8e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||||||||||||| | || || || ||||| | ||||| | ||| | ||| || Sbjct 7397 TGAAGGTGAAAGAGCCATGACCAAGGACAATAATATCCTTGGCAAGTTTGAGCTTACCGG 7456 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| |||||||| || ||||| |||||||| || Sbjct 7457 TATTCCACCTGCTCCCAGAGGGGTCCCTCAGATTGAAGTGACCTTTGACATTGATGCCAA 7516 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 7517 TGGCATTCTCAATGTGTCTGC 7537 >seq2471 Length=18658 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || ||||| || ||||| || ||||| || |||||||||||||| || |||| Sbjct 18440 ATGCCGTTATCACTGTACCTGCATACTTCAATGACTCGCAACGTCAAGCAACCAAGGATG 18499 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | ||||| ||||| || | || |||||||| || || ||||| || Sbjct 18500 CTGGAACTATCTCTGGTCTAAATGTGTTGAGAATCATTAATGAGCCCACTGCAGCAGCTA 18559 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| | || ||||| Sbjct 18560 TTGCTTATGGCTTGGACAAGAA 18581 >seq78908 Length=12940 Score = 93.3 bits (102), Expect = 3e-13 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Plus Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || |||||||||||||| ||||| | | || ||||||||||| | || || Sbjct 2964 GTGGAGATCATTGCCAATGACCAGGGTAACCGCATCACTCCATCATATGTGGCCTTCACC 3023 Query 474449 ---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATCTAATCCTGT 474504 || ||| | ||| ||||| |||||||| || |||| |||| | ||||| || | Sbjct 3024 AGCGAGGGTGAGCGTCTGATTGGTGATGCTGCCAAGAATCA-GCTGACCTCTAACCCCGA 3082 Query 474505 TAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCA 474564 || || | ||||||||||| ||||||||||| || | || | ||| || |||| || Sbjct 3083 GAACACAGTCTTTGATGCTAAGAGATTGATTGGCCGCACTTGGGGTGACTCCTCTGTGCA 3142 Query 474565 A 474565 | Sbjct 3143 A 3143 >seq49244 Length=18477 Score = 93.3 bits (102), Expect = 3e-13 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| ||| | || || || || || || ||||| ||||| || || || || Sbjct 14989 GTAACAAATGCTGTAGTAACCGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACC 15048 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 ||||||||||| | || | || |||||||| | |||||||| || || ||||| || Sbjct 15049 AAAGATGCGGGGACTATCTCGGGACTTAATGTCCTTCGTATTATCAACGAGCCAACTGCT 15108 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| || || || || Sbjct 15109 GCTGCTATTGCTTATGGCCTGGACAAAAA 15137 >seq78724 Length=7557 Score = 89.7 bits (98), Expect = 3e-12 Identities = 340/522 (65%), Gaps = 14/522 (3%) Strand=Plus/Minus Query 475335 CACTCGAAGATGGTCTTTTCTCTGTAAGAGCAACAGCTGGAGATTCACATCTTGGTGGTG 475394 || ||||||| ||| | || || | ||| ||||||||||| | || || ||||| | Sbjct 4445 CAATCGAAGACGGTATCTTTGAGGTCAAAGCCACAGCTGGAGACACTCACCTGGGTGGAG 4386 Query 475395 AAGATTTTGATAATAGACTTGT--ATCATGGTGTGTTGAAGATTTCAAGAGGAAAAATA- 475451 |||| ||||| || | | || | ||| | ||| || || |||||||||||| | | Sbjct 4385 AAGACTTTGACAACCGCATGGTCAACCAT--TTTGTGGAGGAGTTCAAGAGGAAACACAA 4328 Query 475452 -AAGTTGATCTTTCAACATCTGCTAAAGCATTAAGACGTCTTAGAACTGCTTGTGAACGT 475510 ||| ||| ||| | | | |||||| || | || | || |||||||| | Sbjct 4327 GAAGGACATCAGTCATAACAAG--AGAGCATTGAGGAGGCTGCGCACAGCTTGTGAGAGG 4270 Query 475511 GCTAAGCGAGCTCT-TTCTTCTGCTACTCAAACTACTGTTGAAGTTGATTCTCTTTTTGA 475569 || ||| || | || | || | ||| | || | | |||| | || ||||| ||||| Sbjct 4269 GCCAAGAGAACCCTGTCCTCCAGCT-CCCAGGCCAGCATTGAGATCGACTCTCTGTTTGA 4211 Query 475570 AGGAATTGA-TTATAATACTCTTATTACAAGGGCTAAATTTGAAGATATTTGTTCTGATC 475628 || |||| || || ||| || || |||||| || || || | || ||||| | Sbjct 4210 GGGTGTTGACTTCTACACCTC-CATCACCAGGGCTCGCTTCGAGGAGCTGTGCTCTGACC 4152 Query 475629 TCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTTGACAAAT 475688 | || || |||| | || || || || ||| || || ||| | ||| | ||||| Sbjct 4151 TGTTCAGGGGAACATTAGAGCCAGTGGAGAAAGCCCTGAGGGATGCCAAAATGGACAAGG 4092 Query 475689 CACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATAAGAGAAA 475748 ||| | || || || || || || ||||| || || |||| || ||||| ||||| Sbjct 4091 GACAGATTCACGACATCGTCCTGGTTGGAGGCTCCACTCGAATCCCCAAAAT-CCAGAAA 4033 Query 475749 TGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGATGAAGCT 475807 | | || || | || ||||| | || | || | || | || || || || || Sbjct 4032 CTCCTGCAGGATTTCTTCAATGGCAGGGAGCTGAACAAGAGCATCAACCCAGACGAGGCG 3973 Query 475808 GTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGT 475849 || || || || || || ||||| || || ||| | |||||| Sbjct 3972 GTGGCTTACGGTGCCGCCGTCCAGGCCGCCATTCTCTCAGGT 3931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3262471525203176