Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thunnus_20orientalis_20[genbank_20GCA_5F000418415.1_202013-06-27] 133,062 sequences; 684,497,465 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1639 149 7e-31 >seq1639 Length=7166 Score = 149 bits (164), Expect = 7e-31 Identities = 570/881 (65%), Gaps = 18/881 (2%) Strand=Plus/Plus Query 160086 TCAACGTCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGT-AGGATCCAGTG 160144 ||||| ||| || || |||||||| || || ||||| || | | |||| ||| | Sbjct 827 TCAACCTCTGGATCAAACTTATTTGCAAAGAGGTGGTG----TTGTCTCAGGAGCCACTT 882 Query 160145 CACGTCTCCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTA 160204 | ||| || | ||| |||| || || | | | | | | || |||| || ||| Sbjct 883 GAGGTCCCCAGCTCCGTACACACAAACTGCTCTTCTATAGATCCCAGTGCATGGATCGTA 942 Query 160205 CAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGC 160264 | | ||||| | || || ||| | | || ||||||||| | | || || || Sbjct 943 CGGGGCTCCGTCTCTCATATCTCCTGCTAAATAGCTCCACTTCACCACACGAGCAATGGC 1002 Query 160265 CTGCATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCA 160323 |||||||| || |||||||| ||| |||| || || | || || |||||| ||||| Sbjct 1003 TTGCATGTCTGATGTGTCGTACTTG-ACATTAGCAGGCATGGATCCAGGAACGGAGGGCA 1061 Query 160324 TACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCA 160383 | | ||| || |||||||||| ||| || || |||||||| |||||||| ||| |||| Sbjct 1062 TCCTCTGCAGAGTGGCCCACAAGTGCTCATCAGGGCTGTATGTGTCCTTCTCCCACTCCA 1121 Query 160384 TGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACA 160442 || | || || | |||||| |||| || || | || ||| || || || ||| Sbjct 1122 GTAATT-TCTGAACCTCTCTGTCCTGCAGCACATGTTTCACAAAGGCCCTTGTGACCACA 1180 Query 160443 AAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCG 160502 ||||| || | || ||||| || || | | || || || | | |||| |||| || Sbjct 1181 AAGTAGGCATTTCCTGAGAACATGGGGCTCGTAATGGGAGGGGGG-CTTT-TCCTCACAT 1238 Query 160503 GTGT-TAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTG 160561 || | |||| ||| || | || | | ||| | | |||||| Sbjct 1239 TCGTCTGGACA--ACTTGGTTGGTGACATTGTAATGATAACGCCAACGGTTTTTCTTGTA 1296 Query 160562 --CGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTG 160619 | ||| || || | || | ||||| |||| ||| || ||||| || Sbjct 1297 GTCATTGG--TGGCCTCAGATTCCATGCTGTTTCTTCCGTTGAGGGACTTCAGAGCCTGA 1354 Query 160620 ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTC 160679 || ||||| || || |||| || ||||| || || || ||| | || |||| || Sbjct 1355 ACCATCTCCCTATTGGTTTTGATGGGGAAGTCAGTCCCACAGGTGTTGAGCAGGTACCTC 1414 Query 160680 CATTTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTC 160739 || | || | ||| || ||||||| || | ||| |||||||| | | Sbjct 1415 CACTGGACGTGTGACCCCAACAGATCTTTCATGCAGTTGAGATCCGCCTGCACTCTTGAC 1474 Query 160740 CAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGAC 160799 || || ||||| || || | |||| | ||||||||||||| || ||| || || || Sbjct 1475 CATGAGGCGTATACCACTCTTTCTAATCTACTGGCCACAAACACATTAGGTAAGCAGGAA 1534 Query 160800 ACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAA 160859 || ||| || | || ||| || |||| | || ||||||| ||||| || Sbjct 1535 ACAATTGCCTCTACAGCCTTCTGAAATTCCTTAGTGGATTTCTGGTCCACATGCACACAG 1594 Query 160860 TACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGA 160919 || | ||||||||| | ||| | || | || | | ||| |||||||| ||||| | | Sbjct 1595 TAGATGTTCTGAGGAGTGTAAACAGCTCGTAGAAGGCGCTCAAACATCTCAATCTTCTCA 1654 Query 160920 TGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 |||||||| || |||||||| || ||||| || ||||||| Sbjct 1655 TGGATCACCATGGAGTAGGCAATGGGAAAGTCTCTCTCCTC 1695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576259125735120